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Sequence analysis

DIpartite: A tool for detecting bipartite motifs by considering base interdependencies

Mohammad Vahed, Jun-ichi Ishihara, Hiroki Takahashi

Structural analysis of the recognition of the -35 promoter element by SigW from Bacillus subtilis

Eunju Kwon, Shankar Raj Devkota, [ ... ], Dong Young Kim

Borrelia reloaded" (PLoS ONE 13(12): e0208432)">Distinction between Borrelia and Borreliella is more robustly supported by molecular and phenotypic characteristics than all other neighbouring prokaryotic genera: Response to Margos' et al. "The genus Borrelia reloaded" (PLoS ONE 13(12): e0208432)

Radhey S. Gupta

The number of domains in the ribosomal protein S1 as a hallmark of the phylogenetic grouping of bacteria

Andrey V. Machulin, Evgenia I. Deryusheva, Olga M. Selivanova, Oxana V. Galzitskaya

HPC: Hierarchical phylogeny construction

Anindya Das, Xiaoqiu Huang

TreeCluster: Clustering biological sequences using phylogenetic trees

Metin Balaban, Niema Moshiri, [ ... ], Siavash Mirarab

Genome-wide analysis of sulfotransferase genes and their responses to abiotic stresses in Chinese cabbage (Brassica rapa L.)

Lu Jin, Ning Ouyang, [ ... ], Ying Ruan

Faecalibacterium diversity in dairy cow milk

Keith W. Savin, Jody Zawadzki, [ ... ], Benjamin G. Cocks

rawMSA: End-to-end Deep Learning using raw Multiple Sequence Alignments

Claudio Mirabello, Björn Wallner

Viral taxonomy derived from evolutionary genome relationships

Tyler J. Dougan, Stephen R. Quake

Evolutionary dynamics of the H7N9 avian influenza virus based on large-scale sequence analysis

Jiasheng Xiong, Ping Zhao, [ ... ], Lufang Jiang

Small-RNA analysis of pre-basic mother plants and conserved accessions of plant genetic resources for the presence of viruses

Minna-Liisa Rajamäki, Anne Lemmetty, [ ... ], Jari P. T. Valkonen

Identifying genetic markers for a range of phylogenetic utility–From species to family level

Bokyung Choi, Michael D. Crisp, [ ... ], Carsten Külheim

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