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Sequence analysis

DNA barcoding of coastal ray-finned fishes in Vietnam

Pham The Thu, Wen-Chien Huang, [ ... ], Te-Yu Liao

Genome-wide identification and expression profile analysis of nuclear factor Y family genes in Sorghum bicolor L. (Moench)

P. Maheshwari, Divya Kummari, [ ... ], P. B. Kavi Kishor

Using DNA barcoding to improve invasive pest identification at U.S. ports-of-entry

Mary J. L. Madden, Robert G. Young, [ ... ], Robert H. Hanner

Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, [ ... ], Dirk Repsilber

Development of a quantitative polymerase chain reaction assay and environmental DNA sampling methods for Giant Gartersnake (Thamnophis gigas)

Gregg Schumer, Eric C. Hansen, Paul J. Anders, Scott M. Blankenship

New Mycobacteroides abscessus subsp. massiliense strains with recombinant hsp65 gene laterally transferred from Mycobacteroides abscessus subsp. abscessus: Potential for misidentification of M. abscessus strains with the hsp65-based method

Byoung-Jun Kim, Ga-Na Kim, [ ... ], Bum-Joon Kim

Genomic characterization of the complete terpene synthase gene family from Cannabis sativa

Keith D. Allen, Kevin McKernan, [ ... ], Reggie Gaudino

Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment

Kei Kunimasa, Kikuya Kato, Fumio Imamura, Yoji Kukita

ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples

Ardi Tampuu, Zurab Bzhalava, Joakim Dillner, Raul Vicente

Construction of pseudomolecule sequences of Brassica rapa ssp. pekinensis inbred line CT001 and analysis of spontaneous mutations derived via sexual propagation

Jee-Soo Park, Ji-Hyun Park, Young-Doo Park

Homogenous HIV-1 subtype B from the Brazilian Amazon with infrequent diverse BF1 recombinants, subtypes F1 and C among blood donors

Myuki Alfaia Esashika Crispim, Mônica Nogueira da Guarda Reis, [ ... ], Mariane Martins Araújo Stefani

gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Juhana I. Kammonen, Olli-Pekka Smolander, [ ... ], Petri Auvinen

Large scale evaluation of differences between network-based and pairwise sequence-alignment-based methods of dendrogram reconstruction

Daniel Gamermann, Arnau Montagud, [ ... ], Javier F. Urchueguía

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