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Heuristic alignment procedure

An efficient constructive heuristic for the rectangular packing problem with rotations

Xusheng Zhao, Yunqing Rao, [ ... ], Shoubo Yu

On closing the inopportune gap with consistency transformation and iterative refinement

Mario João Jr., Alexandre C. Sena, Vinod E. F. Rebello

Breaking the bonds of reinforcement: Effects of trial outcome, rule consistency and rule complexity against exploitable and unexploitable opponents

Jukka Sundvall, Benjamin James Dyson

Non-sequential protein structure alignment by conformational space annealing and local refinement

InSuk Joung, Jong Yun Kim, Keehyoung Joo, Jooyoung Lee

Homology and linkage in crossover for linear genomes of variable length

Adriaan Merlevede, Henrik Åhl, Carl Troein

Two Simple and Efficient Algorithms to Compute the SP-Score Objective Function of a Multiple Sequence Alignment

Vincent Ranwez

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++

Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt

SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić

Ontology Alignment Repair through Modularization and Confidence-Based Heuristics

Emanuel Santos, Daniel Faria, Catia Pesquita, Francisco M. Couto

CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area

Genki Terashi, Mayuko Takeda-Shitaka

HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis

Luis Santana-Quintero, Hayley Dingerdissen, [ ... ], Vahan Simonyan

MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures

David Díaz, Francisco J. Esteban, [ ... ], Sergio Gálvez

CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

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