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Sequence analysis

PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information

Hao Wu, Hongkai Ji

published 07 Mar 2014

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Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA

Bastiaan Star, Alexander J. Nederbragt, Marianne H. S. Hansen, Morten Skage, Gregor D. Gilfillan, Ian R. Bradbury, Christophe Pampoulie, Nils Chr Stenseth, Kjetill S. Jakobsen, Sissel Jentoft

published 07 Mar 2014

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Crystal Structures of the Novel Cytosolic 5′-Nucleotidase IIIB Explain Its Preference for m⁷GMP

Thomas Monecke, Juliane Buschmann, Piotr Neumann, Elmar Wahle, Ralf Ficner

published 06 Mar 2014

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The Bitter Barricading of Prostaglandin Biosynthesis Pathway: Understanding the Molecular Mechanism of Selective Cyclooxygenase-2 Inhibition by Amarogentin, a Secoiridoid Glycoside from Swertia chirayita

Shantanu Shukla, Khushboo Bafna, Durai Sundar, Sunil S. Thorat

published 06 Mar 2014

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Comparison of Illumina and 454 Deep Sequencing in Participants Failing Raltegravir-Based Antiretroviral Therapy

Jonathan Z. Li, Brad Chapman, Patrick Charlebois, Oliver Hofmann, Brian Weiner, Alyssa J. Porter, Reshmi Samuel, Saran Vardhanabhuti, Lu Zheng, Joseph Eron, Babafemi Taiwo, Michael C. Zody, Matthew R. Henn, Daniel R. Kuritzkes, Winston Hide, and the ACTG A5262 Study Team

published 06 Mar 2014

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Analysis of the Skin Transcriptome in Two Oujiang Color Varieties of Common Carp

Chenghui Wang, Michael Wachholtz, Jun Wang, Xiaolin Liao, Guoqing Lu

published 06 Mar 2014

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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

Wan-Ping Lee, Michael P. Stromberg, Alistair Ward, Chip Stewart, Erik P. Garrison, Gabor T. Marth

published 05 Mar 2014

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Optimal Eukaryotic 18S and Universal 16S/18S Ribosomal RNA Primers and Their Application in a Study of Symbiosis

Yong Wang, Ren Mao Tian, Zhao Ming Gao, Salim Bougouffa, Pei-Yuan Qian

published 03 Mar 2014

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Episodic Positive Selection in the Evolution of Avian Toll-Like Receptor Innate Immunity Genes

Catherine E. Grueber, Graham P. Wallis, Ian G. Jamieson

published 03 Mar 2014

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FRA2 Is a STAT5 Target Gene Regulated by IL-2 in Human CD4 T Cells

Aradhana Rani, Roseanna Greenlaw, Manohursingh Runglall, Stipo Jurcevic, Susan John

published 28 Feb 2014

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TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

Jeffrey C. Glaubitz, Terry M. Casstevens, Fei Lu, James Harriman, Robert J. Elshire, Qi Sun, Edward S. Buckler

published 28 Feb 2014

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Monitoring Fibrous Scaffold Guidance of Three-Dimensional Collagen Organisation Using Minimally-Invasive Second Harmonic Generation

Robin M. Delaine-Smith, Nicola H. Green, Stephen J. Matcher, Sheila MacNeil, Gwendolen C. Reilly

published 28 Feb 2014

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Phylogeny and Molecular Evolution Analysis of PIN-FORMED 1 in Angiosperm

Pengkai Wang, Tielong Cheng, Shuang Wu, Fangfang Zhao, Guangping Wang, Liming Yang, Mengzhu Lu, Jinhui Chen, Jisen Shi

published 28 Feb 2014

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