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RNA sequences

Deep learning framework for RNA 5hmC prediction using RNA language model embeddings

Md Muhaiminul Islam Nafi

Text cryptography and steganography based on RNA sequences generation, true random number generators, and codebook method

Safwat Hamad, Omar Fitian Rashid, Hind M. Al-Dabbas

RPIPLM: Prediction of ncRNA-protein interaction by post-training a dual-tower pretrained biological model with supervised contrastive learning

Yiwei Liu, Ting Bao, [ ... ], Yanbin Wang

rbpTransformer: A novel deep learning model for prediction of piRNA and mRNA bindings

Ahmet Gürhanlı

A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification

Loïc Omnes, Eric Angel, [ ... ], Fariza Tahi

Definer: A computational method for accurate identification of RNA pseudouridine sites based on deep learning

Bo Han, Sudan Bai, [ ... ], Ruihao Xin

GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA

Md. Harun-Or-Roshid, Nhat Truong Pham, Balachandran Manavalan, Hiroyuki Kurata

Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology

Jitsuki Sawamura, Shigeru Morishita, Jun Ishigooka

Expression analysis of box C/D snoRNAs with SNPs between C57BL/6 and MSM/Ms strains in male mouse

Rumiko Saito, Maina Otsu, Hidenori Kiyosawa, Gota Kawai

Prelnc2: A prediction tool for lncRNAs with enhanced multi-level features of RNAs

Hua Gao, Peng Gao, Ning Ye

Identification of RNA pseudouridine sites using deep learning approaches

Abu Zahid Bin Aziz, Md. Al Mehedi Hasan, Jungpil Shin

Multi-agent approach to sequence structure simulation in the RNA World hypothesis

Jaroslaw Synak, Agnieszka Rybarczyk, Jacek Blazewicz

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