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RNA sequences

Deep learning framework for RNA 5hmC prediction using RNA language model embeddings

Md Muhaiminul Islam Nafi

published 03 Feb 2026

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Text cryptography and steganography based on RNA sequences generation, true random number generators, and codebook method

Safwat Hamad, Omar Fitian Rashid, Hind M. Al-Dabbas

published 09 Dec 2025

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RPIPLM: Prediction of ncRNA-protein interaction by post-training a dual-tower pretrained biological model with supervised contrastive learning

Yiwei Liu, Ting Bao, Peng Yin, Shumin Wang, Yanbin Wang

published 14 Aug 2025

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rbpTransformer: A novel deep learning model for prediction of piRNA and mRNA bindings

Ahmet Gürhanlı

published 25 Jun 2025

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A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification

Loïc Omnes, Eric Angel, Pierre Bartet, François Radvanyi, Fariza Tahi

published 25 Apr 2025

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Definer: A computational method for accurate identification of RNA pseudouridine sites based on deep learning

Bo Han, Sudan Bai, Yang Liu, Jiezhang Wu, Xin Feng, Ruihao Xin

published 24 Apr 2025

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GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

published 01 Oct 2024

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Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA

Md. Harun-Or-Roshid, Nhat Truong Pham, Balachandran Manavalan, Hiroyuki Kurata

published 26 Jun 2024

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Several supplementary concepts for applied category-theoretical states over an extended Petri net using an example relating to genetic coding: Toward an abstract algebraic formulation of molecular/genetic biology

Jitsuki Sawamura, Shigeru Morishita, Jun Ishigooka

published 07 Jun 2024

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Expression analysis of box C/D snoRNAs with SNPs between C57BL/6 and MSM/Ms strains in male mouse

Rumiko Saito, Maina Otsu, Hidenori Kiyosawa, Gota Kawai

published 10 Jul 2023

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Prelnc2: A prediction tool for lncRNAs with enhanced multi-level features of RNAs

Hua Gao, Peng Gao, Ning Ye

published 01 Jun 2023

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Identification of RNA pseudouridine sites using deep learning approaches

Abu Zahid Bin Aziz, Md. Al Mehedi Hasan, Jungpil Shin

published 23 Feb 2021

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Multi-agent approach to sequence structure simulation in the RNA World hypothesis

Jaroslaw Synak, Agnieszka Rybarczyk, Jacek Blazewicz

published 28 Aug 2020

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