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RNA sequences

Energy Parameters and Novel Algorithms for an Extended Nearest Neighbor Energy Model of RNA

Ivan Dotu, Vinodh Mechery, Peter Clote

Gene Expression-Based Dosimetry by Dose and Time in Mice Following Acute Radiation Exposure

James D. Tucker, George W. Divine, [ ... ], Gregory W. Auner

Sexually-Transmitted/Founder HIV-1 Cannot Be Directly Predicted from Plasma or PBMC-Derived Viral Quasispecies in the Transmitting Partner

Pierre Frange, Laurence Meyer, [ ... ], for the ANRS PRIMO Cohort Study Group

Elucidation of miRNAs-Mediated Responses to Low Nitrogen Stress by Deep Sequencing of Two Soybean Genotypes

Yejian Wang, Chanjuan Zhang, [ ... ], Longping Yuan

Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures

Samuel Bleckley, Jonathan W. Stone, Susan J. Schroeder

Effective Inhibition of Human Immunodeficiency Virus 1 Replication by Engineered RNase P Ribozyme

Wenbo Zeng, Yuan-Chuan Chen, [ ... ], Fenyong Liu

Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches

Evan Senter, Saad Sheikh, [ ... ], Peter Clote

The Complex Exogenous RNA Spectra in Human Plasma: An Interface with Human Gut Biota?

Kai Wang, Hong Li, [ ... ], David Galas

Novel Small Noncoding RNAs in Mouse Spermatozoa, Zygotes and Early Embryos

Mitsuoki Kawano, Hideya Kawaji, [ ... ], Minoo Rassoulzadegan

Conformational Features of Topologically Classified RNA Secondary Structures

Jimmy Ka Ho Chiu, Yi-Ping Phoebe Chen

Generalized Centroid Estimators in Bioinformatics

Michiaki Hamada, Hisanori Kiryu, Wataru Iwasaki, Kiyoshi Asai

Computing the Partition Function for Kinetically Trapped RNA Secondary Structures

William A. Lorenz, Peter Clote

Re-Inspection of Small RNA Sequence Datasets Reveals Several Novel Human miRNA Genes

Thomas Birkballe Hansen, Jesper Bertram Bramsen, Jørgen Kjems

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