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Protein structure prediction

Prediction of pre- and postfusion conformations of class I fusion proteins with AlphaFold2

Sevilay Gülesen, Victoria Most, Clara T. Schoeder, Jens Meiler

published 16 Jun 2026

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Structural bioinformatic studies of eight integral transmembrane NADPH oxidases and their AlphaFold 3 predicted QTY analogs with reduced hydrophobicity

Tutu Hu, Rick Cheng, Edward Chen, Shuguang Zhang

published 10 Jun 2026

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Predicting unknown binding sites for transition-metal-based compounds in proteins

Andrea Levy, Ursula Rothlisberger

published 09 Jun 2026

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In silico pharmacological analysis of Tinospora cordifolia compounds targeting African swine fever virus B175L

Kasuni Karunarathne, Saumya Poorni, Nethra Jayampathi, Hasitha Dhananjaya, Anju Hasintha, Malinda Hulugalla, Thilini A.N. Mahakapuge, Nadeeka Nethmini, Naveed Iqbal, Barana Jayawardana, Lakmal Ranathunga

published 03 Jun 2026

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System immunoinformatics–based design of a multi-epitope vaccine candidate against La Crosse virus

Md. Habib Ullah Masum, Homaira Pervin Heema, Ahmad Abdullah Mahdeen, Syed Mohammad Lokman, Zarin Tasnim, Md. Rakibul Hasan, Sanjida Hossain Arpa, Rehana Parvin, Jannatul Ferdous, Mohammad Sharif Uddin

published 28 May 2026

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Decoding the genetic basis of demyelination: Prediction of potential pathogenic coding and regulatory noncoding MBP SNPs in multiple sclerosis

Arwa Ibrahim Alwabran, Ghalia Mahfod Aldoseri, Ghanem Mahfod Aldoseri, Samah O. Mohager, Mobarak Mahfod Aldoseri, Ebtihal Kamal

published 21 May 2026

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Cancer mutations in RAD51 and its paralogues

Anna L. Valentine, Isabella L. Huth, Nika M. Duff, Aisha Z. Rabbani, Kateri N. Donahue, Wesley A. Bush, Renee A. Bouley, Ruben C. Petreaca

published 14 May 2026

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Extracellular activity of a bacterial protease associated with reduced phage infectivity

Ehud Herbst, Gael Rosen Blechman, Taya Fedorenko, Sarah Melamed, Gil Amitai, Rotem Sorek

published 14 May 2026

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Phosphorylation landscape of dengue virus proteins and their implications in protein-protein interactions

Prakhar Agrawal, Rahul Yadav, Arumugam Madhumalar, Ganesan Senthil Kumar

published 12 May 2026

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Design and in silico evaluation of an mRNA vaccine against HTLV-1 using AI-driven reverse vaccinology approaches

Nadia Seifi, Navid Nezafat, Mohammad Soroosh Hajizade, Manica Negahdaripour

published 06 May 2026

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Effect of HIV-1 subtype-specific Tat protein polymorphisms on Tat-TAR interaction

Alnara Zhamalbekova, Mahmoud A. A. Ibrahim, Peter A. Sidhom, Syed Hani Abidi

published 20 Apr 2026

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Identification of neuronatin as a SERCA2b regulin-like protein and assessment of its aggregation propensity via coarse grained simulations

Omar Ben Mariem, Lara Coppi, Emma De Fabiani, Ivano Eberini, Maurizio Crestani

published 09 Apr 2026

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Computational prediction of binding affinity and structural impact of three Pakistani SARS-CoV-2 spike RBD variants on human ACE2 interaction

Muhammad Usama, Muhammad Azeem, Ghulam Mustafa

published 01 Apr 2026

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