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Protein structure databases

On the Importance of the Distance Measures Used to Train and Test Knowledge-Based Potentials for Proteins

Martin Carlsen, Patrice Koehl, Peter Røgen

published 20 Nov 2014

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Structural Model of the hUbA1-UbcH10 Quaternary Complex: In Silico and Experimental Analysis of the Protein-Protein Interactions between E1, E2 and Ubiquitin

Stefania Correale, Ivan de Paola, Carmine Marco Morgillo, Antonella Federico, Laura Zaccaro, Pierlorenzo Pallante, Aldo Galeone, Alfredo Fusco, Emilia Pedone, F. Javier Luque, Bruno Catalanotti

published 06 Nov 2014

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In Vitro, In Silico and In Vivo Studies of Ursolic Acid as an Anti-Filarial Agent

Komal Kalani, Vikas Kushwaha, Pooja Sharma, Richa Verma, Mukesh Srivastava, Feroz Khan, P. K. Murthy, Santosh Kumar Srivastava

published 06 Nov 2014

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Computational Prediction and Analysis of Breast Cancer Targets for 6-Methyl-1, 3, 8-Trichlorodibenzofuran

Kumaraswamy Naidu Chitrala, Suneetha Yeguvapalli

published 03 Nov 2014

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Computational Insights into the Inhibitory Mechanism of Human AKT1 by an Orally Active Inhibitor, MK-2206

Mohd Rehan, Mohd A. Beg, Shadma Parveen, Ghazi A. Damanhouri, Galila F. Zaher

published 17 Oct 2014

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How Structure Defines Affinity in Protein-Protein Interactions

Ariel Erijman, Eran Rosenthal, Julia M. Shifman

published 16 Oct 2014

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Two Structural Motifs within Canonical EF-Hand Calcium-Binding Domains Identify Five Different Classes of Calcium Buffers and Sensors

Konstantin Denessiouk, Sergei Permyakov, Alexander Denesyuk, Eugene Permyakov, Mark S. Johnson

published 14 Oct 2014

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Protein NMR Structures Refined without NOE Data

Hyojung Ryu, Tae-Rae Kim, SeonJoo Ahn, Sunyoung Ji, Jinhyuk Lee

published 03 Oct 2014

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Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities

Adrien Guilhot-Gaudeffroy, Christine Froidevaux, Jérôme Azé, Julie Bernauer

published 30 Sep 2014

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A Simple Extension to the CMASA Method for the Prediction of Catalytic Residues in the Presence of Single Point Mutations

David I. Flores, Rogerio R. Sotelo-Mundo, Carlos A. Brizuela

published 30 Sep 2014

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How a Spatial Arrangement of Secondary Structure Elements Is Dispersed in the Universe of Protein Folds

Shintaro Minami, Kengo Sawada, George Chikenji

published 22 Sep 2014

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Combining Structural Modeling with Ensemble Machine Learning to Accurately Predict Protein Fold Stability and Binding Affinity Effects upon Mutation

Niklas Berliner, Joan Teyra, Recep Çolak, Sebastian Garcia Lopez, Philip M. Kim

published 22 Sep 2014

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Common Hydrogen Bond Interactions in Diverse Phosphoryl Transfer Active Sites

Jean C. Summerton, Gregory M. Martin, Jeffrey D. Evanseck, Michael S. Chapman

published 19 Sep 2014

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