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Protein structure databases

On the Importance of the Distance Measures Used to Train and Test Knowledge-Based Potentials for Proteins

Martin Carlsen, Patrice Koehl, Peter Røgen

Structural Model of the hUbA1-UbcH10 Quaternary Complex: In Silico and Experimental Analysis of the Protein-Protein Interactions between E1, E2 and Ubiquitin

Stefania Correale, Ivan de Paola, [ ... ], Bruno Catalanotti

In Vitro, In Silico and In Vivo Studies of Ursolic Acid as an Anti-Filarial Agent

Komal Kalani, Vikas Kushwaha, [ ... ], Santosh Kumar Srivastava

Computational Prediction and Analysis of Breast Cancer Targets for 6-Methyl-1, 3, 8-Trichlorodibenzofuran

Kumaraswamy Naidu Chitrala, Suneetha Yeguvapalli

Computational Insights into the Inhibitory Mechanism of Human AKT1 by an Orally Active Inhibitor, MK-2206

Mohd Rehan, Mohd A. Beg, [ ... ], Galila F. Zaher

How Structure Defines Affinity in Protein-Protein Interactions

Ariel Erijman, Eran Rosenthal, Julia M. Shifman

Two Structural Motifs within Canonical EF-Hand Calcium-Binding Domains Identify Five Different Classes of Calcium Buffers and Sensors

Konstantin Denessiouk, Sergei Permyakov, [ ... ], Mark S. Johnson

Protein NMR Structures Refined without NOE Data

Hyojung Ryu, Tae-Rae Kim, [ ... ], Jinhyuk Lee

Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities

Adrien Guilhot-Gaudeffroy, Christine Froidevaux, Jérôme Azé, Julie Bernauer

A Simple Extension to the CMASA Method for the Prediction of Catalytic Residues in the Presence of Single Point Mutations

David I. Flores, Rogerio R. Sotelo-Mundo, Carlos A. Brizuela

How a Spatial Arrangement of Secondary Structure Elements Is Dispersed in the Universe of Protein Folds

Shintaro Minami, Kengo Sawada, George Chikenji

Combining Structural Modeling with Ensemble Machine Learning to Accurately Predict Protein Fold Stability and Binding Affinity Effects upon Mutation

Niklas Berliner, Joan Teyra, [ ... ], Philip M. Kim

Common Hydrogen Bond Interactions in Diverse Phosphoryl Transfer Active Sites

Jean C. Summerton, Gregory M. Martin, Jeffrey D. Evanseck, Michael S. Chapman

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