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Ontologies

ProKinO: An Ontology for Integrative Analysis of Protein Kinases in Cancer

Gurinder Gosal, Krys J. Kochut, Natarajan Kannan

The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web

Janna Hastings, Leonid Chepelev, [ ... ], Michel Dumontier

Robustness Analysis and Behavior Discrimination in Enzymatic Reaction Networks

Alexandre Donzé, Eric Fanchon, [ ... ], Philippe Tracqui

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Robert Hoehndorf, Michel Dumontier, [ ... ], Georgios V. Gkoutos

Dietary Protein Restriction during F₀ Pregnancy in Rats Induces Transgenerational Changes in the Hepatic Transcriptome in Female Offspring

Samuel P. Hoile, Karen A. Lillycrop, [ ... ], Graham C. Burdge

Top-Level Categories of Constitutively Organized Material Entities - Suggestions for a Formal Top-Level Ontology

Lars Vogt, Peter Grobe, Björn Quast, Thomas Bartolomaeus

Named Entity Recognition for Bacterial Type IV Secretion Systems

Sophia Ananiadou, Dan Sullivan, [ ... ], Bruno Sobral

Genes and Gene Ontologies Common to Airflow Obstruction and Emphysema in the Lungs of Patients with COPD

Santiyagu M. Savarimuthu Francis, Jill E. Larsen, [ ... ], Ian A. Yang

Do Two Machine-Learning Based Prognostic Signatures for Breast Cancer Capture the Same Biological Processes?

Yotam Drier, Eytan Domany

A Gross Anatomy Ontology for Hymenoptera

Matthew J. Yoder, István Mikó, [ ... ], Andrew R. Deans

The Illogicality of Stock-Brokers: Psychological Experiments on the Effects of Prior Knowledge and Belief Biases on Logical Reasoning in Stock Trading

Markus Knauff, Claudia Budeck, Ann G. Wolf, Kai Hamburger

Ontology-Based Meta-Analysis of Global Collections of High-Throughput Public Data

Ilya Kupershmidt, Qiaojuan Jane Su, [ ... ], Mostafa Ronaghi

Adding a Little Reality to Building Ontologies for Biology

Phillip Lord, Robert Stevens

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