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Ontologies

Genes and Gene Ontologies Common to Airflow Obstruction and Emphysema in the Lungs of Patients with COPD

Santiyagu M. Savarimuthu Francis, Jill E. Larsen, [ ... ], Ian A. Yang

Do Two Machine-Learning Based Prognostic Signatures for Breast Cancer Capture the Same Biological Processes?

Yotam Drier, Eytan Domany

A Gross Anatomy Ontology for Hymenoptera

Matthew J. Yoder, István Mikó, [ ... ], Andrew R. Deans

The Illogicality of Stock-Brokers: Psychological Experiments on the Effects of Prior Knowledge and Belief Biases on Logical Reasoning in Stock Trading

Markus Knauff, Claudia Budeck, Ann G. Wolf, Kai Hamburger

Ontology-Based Meta-Analysis of Global Collections of High-Throughput Public Data

Ilya Kupershmidt, Qiaojuan Jane Su, [ ... ], Mostafa Ronaghi

Adding a Little Reality to Building Ontologies for Biology

Phillip Lord, Robert Stevens

Partitioning of Minimotifs Based on Function with Improved Prediction Accuracy

Sanguthevar Rajasekaran, Tian Mi, [ ... ], Martin R. Schiller

Statistical Tests for Associations between Two Directed Acyclic Graphs

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Michael Dannemann, Janet Kelso

Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature

Wasila M. Dahdul, James P. Balhoff, [ ... ], Paula M. Mabee

Phenex: Ontological Annotation of Phenotypic Diversity

James P. Balhoff, Wasila M. Dahdul, [ ... ], Todd J. Vision

Zsyntax: A Formal Language for Molecular Biology with Projected Applications in Text Mining and Biological Prediction

Giovanni Boniolo, Marcello D'Agostino, Pier Paolo Di Fiore

Transcriptional Analysis of Fracture Healing and the Induction of Embryonic Stem Cell–Related Genes

Manish Bais, Jody McLean, [ ... ], Louis C. Gerstenfeld

Biological Process Linkage Networks

Dikla Dotan-Cohen, Stan Letovsky, Avraham A. Melkman, Simon Kasif

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