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Ontologies

Identifying Novel Drug Indications through Automated Reasoning

Luis Tari, Nguyen Vo, [ ... ], James Cai

BiofOmics: A Web Platform for the Systematic and Standardized Collection of High-Throughput Biofilm Data

Anália Lourenço, Andreia Ferreira, [ ... ], Nuno F. Azevedo

Dworkin’s Paradox

Seung Ki Baek, Jung-Kyoo Choi, Beom Jun Kim

Center of Excellence in Research Reporting in Neurosurgery - Diagnostic Ontology

Amrapali Zaveri, Jatin Shah, [ ... ], Ricardo Pietrobon

Accommodating Ontologies to Biological Reality—Top-Level Categories of Cumulative-Constitutively Organized Material Entities

Lars Vogt, Peter Grobe, Björn Quast, Thomas Bartolomaeus

Turning Text into Research Networks: Information Retrieval and Computational Ontologies in the Creation of Scientific Databases

Flávio Ceci, Ricardo Pietrobon, Alexandre Leopoldo Gonçalves

ProKinO: An Ontology for Integrative Analysis of Protein Kinases in Cancer

Gurinder Gosal, Krys J. Kochut, Natarajan Kannan

The Chemical Information Ontology: Provenance and Disambiguation for Chemical Data on the Biological Semantic Web

Janna Hastings, Leonid Chepelev, [ ... ], Michel Dumontier

Robustness Analysis and Behavior Discrimination in Enzymatic Reaction Networks

Alexandre Donzé, Eric Fanchon, [ ... ], Philippe Tracqui

Interoperability between Biomedical Ontologies through Relation Expansion, Upper-Level Ontologies and Automatic Reasoning

Robert Hoehndorf, Michel Dumontier, [ ... ], Georgios V. Gkoutos

Dietary Protein Restriction during F₀ Pregnancy in Rats Induces Transgenerational Changes in the Hepatic Transcriptome in Female Offspring

Samuel P. Hoile, Karen A. Lillycrop, [ ... ], Graham C. Burdge

Top-Level Categories of Constitutively Organized Material Entities - Suggestions for a Formal Top-Level Ontology

Lars Vogt, Peter Grobe, Björn Quast, Thomas Bartolomaeus

Named Entity Recognition for Bacterial Type IV Secretion Systems

Sophia Ananiadou, Dan Sullivan, [ ... ], Bruno Sobral

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