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Ontologies

Partitioning of Minimotifs Based on Function with Improved Prediction Accuracy

Sanguthevar Rajasekaran, Tian Mi, [ ... ], Martin R. Schiller

Statistical Tests for Associations between Two Directed Acyclic Graphs

Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Michael Dannemann, Janet Kelso

Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature

Wasila M. Dahdul, James P. Balhoff, [ ... ], Paula M. Mabee

Phenex: Ontological Annotation of Phenotypic Diversity

James P. Balhoff, Wasila M. Dahdul, [ ... ], Todd J. Vision

Zsyntax: A Formal Language for Molecular Biology with Projected Applications in Text Mining and Biological Prediction

Giovanni Boniolo, Marcello D'Agostino, Pier Paolo Di Fiore

Transcriptional Analysis of Fracture Healing and the Induction of Embryonic Stem Cell–Related Genes

Manish Bais, Jody McLean, [ ... ], Louis C. Gerstenfeld

Biological Process Linkage Networks

Dikla Dotan-Cohen, Stan Letovsky, Avraham A. Melkman, Simon Kasif

Width of Gene Expression Profile Drives Alternative Splicing

Daniel Wegmann, Isabelle Dupanloup, Laurent Excoffier

A New Perspective on Transcriptional System Regulation (TSR): Towards TSR Profiling

Rudolf S. N. Fehrmann, Hendrik J. M. de Jonge, [ ... ], Eveline S. J. M. de Bont

Gene-Centric Characteristics of Genome-Wide Association Studies

Changzheng Dong, Ziliang Qian, [ ... ], Yixue Li

Deductive Biocomputing

Jeff Shrager, Richard Waldinger, Mark Stickel, J.P. Massar

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