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Microbial genomics

Comparative Bacterial Proteomics: Analysis of the Core Genome Concept

Stephen J. Callister, Lee Ann McCue, Joshua E. Turse, Matthew E. Monroe, Kenneth J. Auberry, Richard D. Smith, Joshua N. Adkins, Mary S. Lipton

published 06 Feb 2008

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The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples

Shannon J. Williamson, Douglas B. Rusch, Shibu Yooseph, Aaron L. Halpern, Karla B. Heidelberg, John I. Glass, Cynthia Andrews-Pfannkoch, Douglas Fadrosh, Christopher S. Miller, Granger Sutton, Marvin Frazier, J. Craig Venter

published 23 Jan 2008

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Genome Biology of Actinobacillus pleuropneumoniae JL03, an Isolate of Serotype 3 Prevalent in China

Zhuofei Xu, Yan Zhou, Liangjun Li, Rui Zhou, Shaobo Xiao, Yun Wan, Sihua Zhang, Kai Wang, Wei Li, Lu Li, Hui Jin, Mingsong Kang, Baolige Dalai, Tingting Li, Lei Liu, Yangyi Cheng, Lei Zhang, Tao Xu, Huajun Zheng, Shiying Pu, Bofei Wang, Wenyi Gu, Xiang-Lin Zhang, Geng-Feng Zhu, Shengyue Wang, Guo-Ping Zhao, Huanchun Chen

published 16 Jan 2008

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Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference

K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy

published 21 Nov 2007

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Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms

Saliou Fall, Anne Mercier, Franck Bertolla, Alexandra Calteau, Laurent Gueguen, Guy Perrière, Timothy M. Vogel, Pascal Simonet

published 24 Oct 2007

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Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks

Kira S. Makarova, Marina V. Omelchenko, Elena K. Gaidamakova, Vera Y. Matrosova, Alexander Vasilenko, Min Zhai, Alla Lapidus, Alex Copeland, Edwin Kim, Miriam Land, Konstantinos Mavromatis, Samuel Pitluck, Paul M. Richardson, Chris Detter, Thomas Brettin, Elizabeth Saunders, Barry Lai, Bruce Ravel, Kenneth M. Kemner, Yuri I. Wolf, Alexander Sorokin, Anna V. Gerasimova, Mikhail S. Gelfand, James K. Fredrickson, Eugene V. Koonin, Michael J. Daly

published 26 Sep 2007

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Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat

Ana-Belen Martín-Cuadrado, Purificación López-García, Juan-Carlos Alba, David Moreira, Luis Monticelli, Axel Strittmatter, Gerhard Gottschalk, Francisco Rodríguez-Valera

published 19 Sep 2007

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Selection against Spurious Promoter Motifs Correlates with Translational Efficiency across Bacteria

Jeffrey L. Froula, M. Pilar Francino

published 15 Aug 2007

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A Gammaherpesviral Internal Repeat Contributes to Latency Amplification

Nagendra N. Thakur, Susanne El-Gogo, Beatrix Steer, Klaus Freimüller, Andreas Waha, Heiko Adler

published 15 Aug 2007

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Global Surveillance of Emerging Influenza Virus Genotypes by Mass Spectrometry

Rangarajan Sampath, Kevin L. Russell, Christian Massire, Mark W. Eshoo, Vanessa Harpin, Lawrence B. Blyn, Rachael Melton, Cristina Ivy, Thuy Pennella, Feng Li, Harold Levene, Thomas A. Hall, Brian Libby, Nancy Fan, Demetrius J. Walcott, Raymond Ranken, Michael Pear, Amy Schink, Jose Gutierrez, Jared Drader, David Moore, David Metzgar, Lynda Addington, Richard Rothman, Charlotte A. Gaydos, Samuel Yang, Kirsten St. George, Meghan E. Fuschino, Amy B. Dean, David E. Stallknecht, Ginger Goekjian, Samuel Yingst, Marshall Monteville, Magdi D. Saad, Chris A. Whitehouse, Carson Baldwin, Karl H. Rudnick, Steven A. Hofstadler, Stanley M. Lemon, David J. Ecker

published 30 May 2007

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Large-Scale Comparative Genomic Ranking of Taxonomically Restricted Genes (TRGs) in Bacterial and Archaeal Genomes

Gareth A. Wilson, Edward J. Feil, Andrew K. Lilley, Dawn Field

published 28 Mar 2007

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Plasmids and Rickettsial Evolution: Insight from Rickettsia felis

Joseph J. Gillespie, Magda S. Beier, M. Sayeedur Rahman, Nicole C. Ammerman, Joshua M. Shallom, Anjan Purkayastha, Bruno S. Sobral, Abdu F. Azad

published 07 Mar 2007

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Regulated Polyploidy in Halophilic Archaea

Sebastian Breuert, Thorsten Allers, Gabi Spohn, Jörg Soppa

published 20 Dec 2006

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