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Genomic databases

Codon-aware multi-scale feature fusion for metagenomic sequence classification

Yan Qian, Quanjie Song, Xinyi Xie, Li Deng

published 05 Oct 2026

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Systematic analysis of global O-serotype prevalence of neonatal extraintestinal pathogenic Escherichia coli: A protocol integrating previous research and bioinformatics databases

Dongmiao Zhang, Peicen Zou, Ruiqi Xiao, Jiacheng Li, Sihan Sheng, Ruoyi Xiao, Xiao Liang, Yajuan Wang

published 24 Aug 2026

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Phage-plasmid-like elements are found throughout diverse environments and encode niche-specific functional traits

James I. Mullet, Liqing Zhang, Amy Pruden, Connor L. Brown

published 29 May 2026

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Variants in the DNAH11 gene responsible for primary ciliary dyskinesia or probably atypical primary ciliary dyskinesia presenting left-right asymmetry disorder

Kai Zhao, Lamei Yuan, Ying Xiong, Hong Xia, Sheng Deng, Ming Chen, Yunjie Liao, Jiangang Wang, Hao Deng

published 08 May 2026

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A novel SLC20A2 nonsense variant and mechanistic studies of primary brain calcification

Yi Li, Lamei Yuan, Han Chen, Wen Zheng, Hongbo Xu, Zhijian Yang, Dan He, Hao Deng

published 17 Apr 2026

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Qualitative analysis of genomic mutations and antibiotic susceptibility testing of Pseudomonas aeruginosa isolates from chronic lung infections

Ad C. Fluit, Jumamurat R. Bayjanov, María Díez Aguilar, Rafael Cantón, Deidre F. Gilpin, Michael M. Tunney, Miquel B. Ekkelenkamp

published 06 Mar 2026

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Doing more with less: Genomic quasi-G-primes differentiate septic from healthy patients

Congzhou M. Sha, Michail Patsakis, Ioannis Mouratidis, Xiaoyuan Wei, Taejung Chung, Jasna Kovac, Ilias Georgakopoulos-Soares

published 06 Feb 2026

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Candidate orphan genes: Reassessing uniqueness

Sheetalpreet K. Maan, Xuan Y. Butzin, Steven X. Ge, Nicholas C. Butzin

published 31 Dec 2025

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eDNA reveals spatial differences in species composition of protected rockfishes

Stephanie A. Matthews, Olivia M. Scott, Meredith V. Everett, Megan R. Shaffer, Elizabeth Andruszkiewicz Allan, Andrew O. Shelton, Gregory D. Williams, Abigail Wells, Krista M. Nichols, Ryan P. Kelly

published 01 Dec 2025

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Extensive novel diversity and phenotypic associations in the dromedary camel microbiome are revealed through deep metagenomics and machine learning

Fathi A. Mubaraki

published 17 Jul 2025

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Characterization of Congregicoccus parvus gen. nov., sp. nov., a novel slow-growing ultramicrobacterium of the phylum Verrucomicrobiota

Md. Samiul Islam, Kyosuke Yamamoto, Naoki Morita, Wataru Kitagawa, Isao Yumoto, Souichiro Kato, Ryosuke Nakai, Kensuke Igarashi

published 25 Jun 2025

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Genetic variations and recurrence in stage III Korean colorectal cancer: Insights from tumor-only mutation analysis

Hajin Jeon, Jong Lyul Lee, Hyeran Shim, Soobok Joe, Iksu Byeon, Chan Wook Kim, Seok-Byung Lim, In Ja Park, Yong Sik Yoon, Hoang Bao Khanh Chu, Young-Joon Kim, Chang Sik Yu, Jin Ok Yang

published 23 May 2025

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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site

Rebecca A. Reiss, Peter A. Guerra, Oleg Makhnin, Matthew Kellom

published 14 Feb 2025

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