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Genomic databases

Genomic diversity and molecular epidemiology of Pasteurella multocida

Emily Smith, Elizabeth Miller, Jeannette Munoz Aguayo, Cristian Flores Figueroa, Jill Nezworski, Marissa Studniski, Ben Wileman, Timothy Johnson

published 06 Apr 2021

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Genome-wide identification and expression analysis of the NCED family in cotton (Gossypium hirsutum L.)

QingHua Li, XianTao Yu, Long Chen, Gang Zhao, ShiZhou Li, Hao Zhou, Yu Dai, Na Sun, YongFei Xie, JunShan Gao, DaHui Li, Xu Sun, Ning Guo

published 25 Feb 2021

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DALIA- a comprehensive resource of Disease Alleles in Arab population

Aastha Vatsyayan, Parul Sharma, Shrey Gupta, Sumiti Sandhu, Seetha Lakshmi Venu, Vandana Sharma, Bouabid Badaoui, Kaidi Azedine, Serti Youssef, Anna Rajab, Alaaeldin Fayez, Seema Madinur, Anop Ranawat, Kavita Pandhare, Srinivasan Ramachandran, Sridhar Sivasubbu, Vinod Scaria

published 13 Jan 2021

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Novel candidates of pathogenic variants of the BRCA1 and BRCA2 genes from a dataset of 3,552 Japanese whole genomes (3.5KJPNv2)

Hideki Tokunaga, Keita Iida, Atsushi Hozawa, Soichi Ogishima, Yoh Watanabe, Shogo Shigeta, Muneaki Shimada, Yumi Yamaguchi-Kabata, Shu Tadaka, Fumiki Katsuoka, Shin Ito, Kazuki Kumada, Yohei Hamanaka, Nobuo Fuse, Kengo Kinoshita, Masayuki Yamamoto, Nobuo Yaegashi, Jun Yasuda

published 11 Jan 2021

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Genome-wide characterization of WRKY gene family in Helianthus annuus L. and their expression profiles under biotic and abiotic stresses

Juanjuan Li, Faisal Islam, Qian Huang, Jian Wang, Weijun Zhou, Ling Xu, Chong Yang

published 03 Dec 2020

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Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations

Meriem Laamarti, Tarek Alouane, Souad Kartti, M. W. Chemao-Elfihri, Mohammed Hakmi, Abdelomunim Essabbar, Mohamed Laamarti, Haitam Hlali, Houda Bendani, Nassma Boumajdi, Oussama Benhrif, Loubna Allam, Naima El Hafidi, Rachid El Jaoudi, Imane Allali, Nabila Marchoudi, Jamal Fekkak, Houda Benrahma, Chakib Nejjari, Saaid Amzazi, Lahcen Belyamani, Azeddine Ibrahimi

published 10 Nov 2020

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Prometheus, an omics portal for interkingdom comparative genomic analyses

Gunhwan Ko, Insu Jang, Namjin Koo, Seong-Jin Park, Sang-Ho Oh, Min-Seo Kim, Jin-Hyuk Choi, Hyeongmin Kim, Young Mi Sim, Iksu Byeon, Pan-Gyu Kim, Kye Young Kim, Jong-Cheol Yoon, Kyung-Lok Mun, Banghyuk Lee, Gukhee Han, Yong-Min Kim

published 28 Oct 2020

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Big Data in metagenomics: Apache Spark vs MPI

José M. Abuín, Nuno Lopes, Luís Ferreira, Tomás F. Pena, Bertil Schmidt

published 06 Oct 2020

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Identification of the significant pathways of Banxia Houpu decoction in the treatment of depression based on network pharmacology

Zi-ying Chen, Dan-feng Xie, Zhi-yuan Liu, Yong-qi Zhong, Jing-yan Zeng, Zheng Chen, Xin-lin Chen

published 30 Sep 2020

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Single-molecule real-time sequencing of the full-length transcriptome of loquat under low-temperature stress

Cuiping Pan, Yongqing Wang, Lian Tao, Hui Zhang, Qunxian Deng, Zhiwu Yang, Zhuoheng Chi, Yunmiao Yang

published 11 Sep 2020

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MISTIC: A prediction tool to reveal disease-relevant deleterious missense variants

Kirsley Chennen, Thomas Weber, Xavière Lornage, Arnaud Kress, Johann Böhm, Julie Thompson, Jocelyn Laporte, Olivier Poch

published 31 Jul 2020

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ShAn: An easy-to-use tool for interactive and integrated variant annotation

Venkat Subramaniam Rathinakannan, Hannu-Pekka Schukov, Samuel Heron, Johanna Schleutker, Csilla Sipeky

published 07 Jul 2020

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The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala)

Katharina Mauer, Sören Lukas Hellmann, Marco Groth, Andreas C. Fröbius, Hans Zischler, Thomas Hankeln, Holger Herlyn

published 23 Jun 2020

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