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Genome sequencing

From chip to SNP: Rapid development and evaluation of a targeted capture genotyping-by-sequencing approach to support research and management of a plaguing rodent

Kevin P. Oh, Nikki Van de Weyer, [ ... ], Peter R. Brown

Evaluation of an optimized germline exomes pipeline using BWA-MEM2 and Dragen-GATK tools

Nofe Alganmi, Heba Abusamra

Antigen concentration, viral load, and test performance for SARS-CoV-2 in multiple specimen types

Allison Golden, Michelle Oliveira-Silva, [ ... ], Gonzalo J. Domingo

Rapid genotyping of porcine reproductive and respiratory syndrome virus (PRRSV) using MinION nanopore sequencing

Leonardo Cardia Caserta, Jianqiang Zhang, Pablo Piñeyro, Diego G. Diel

Chromosome-scale genome sequence assemblies of the ‘Autumn Bliss’ and ‘Malling Jewel’ cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data

R. Jordan Price, Jahn Davik, [ ... ], Daniel James Sargent

Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing

Sureshnee Pillay, James Emmanuel San, [ ... ], Jennifer Giandhari

A comprehensive performance analysis of sequence-based within-sample testing NIPT methods

Tom Mokveld, Zaid Al-Ars, Erik A. Sistermans, Marcel Reinders

Optimised protocol for monitoring SARS-CoV-2 in wastewater using reverse complement PCR-based whole-genome sequencing

Harry T. Child, Paul A. O’Neill, [ ... ], Aaron R. Jeffries

Clonal isolates of Treponema pallidum subsp. pallidum Nichols provide evidence for the occurrence of microevolution during experimental rabbit infection and in vitro culture

Diane G. Edmondson, Bridget D. De Lay, [ ... ], Steven J. Norris

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

Jared Lumpe, Lynette Gumbleton, [ ... ], Mark Pandori

Cost-conscious generation of multiplexed short-read DNA libraries for whole-genome sequencing

Ashley Jones, David Stanley, [ ... ], Norman Warthmann

Awareness, understanding, and interest in personalized medicine: A cross-sectional survey study of college students

Yingke Xu, Qing Wu

SARS-CoV-2 genotyping and sequencing following a simple and economical RNA extraction and storage protocol

Sarah Hernandez, Phuong-Vi Nguyen, [ ... ], Jesse J. Waggoner

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