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Genome annotation

Characterization of the Small RNA Transcriptomes of Androgen Dependent and Independent Prostate Cancer Cell Line by Deep Sequencing

Gang Xu, Jinyu Wu, [ ... ], Zhihua Tao

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur

Ulf Schaefer, Rimantas Kodzius, [ ... ], Vladimir B. Bajic

GOPred: GO Molecular Function Prediction by Combined Classifiers

Ömer Sinan Saraç, Volkan Atalay, Rengul Cetin-Atalay

Exploring the Genetic Basis of Variation in Gene Predictions with a Synthetic Association Study

Tera C. Levin, Andrew M. Glazer, [ ... ], Michael B. Eisen

Large-Scale Evidence for Conservation of NMD Candidature Across Mammals

David A. de Lima Morais, Paul M. Harrison

MER41 Repeat Sequences Contain Inducible STAT1 Binding Sites

Christoph D. Schmid, Philipp Bucher

Using Deep RNA Sequencing for the Structural Annotation of the Laccaria Bicolor Mycorrhizal Transcriptome

Peter E. Larsen, Geetika Trivedi, [ ... ], Frank R. Collart

Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer

Samantha N. McNulty, Jeremy M. Foster, [ ... ], Peter U. Fischer

CODA: Accurate Detection of Functional Associations between Proteins in Eukaryotic Genomes Using Domain Fusion

Adam J. Reid, Juan A. G. Ranea, Andrew B. Clegg, Christine A. Orengo

Allelic Gene Structure Variations in Anopheles gambiae Mosquitoes

Jun Li, Jose M. C. Ribeiro, Guiyun Yan

Re-Annotation Is an Essential Step in Systems Biology Modeling of Functional Genomics Data

Bart H. J. van den Berg, Fiona M. McCarthy, Susan J. Lamont, Shane C. Burgess

TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

Jason A. Greenbaum, Erika Assarsson, [ ... ], Bjoern Peters

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

Matthew R. Henn, Matthew B. Sullivan, [ ... ], Sallie W. Chisholm

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