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Gene regulatory networks

IncGraph: Incremental graphlet counting for topology optimisation

Robrecht Cannoodt, Joeri Ruyssinck, [ ... ], Yvan Saeys

Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries)

Lei Hou, Zhibin Ji, [ ... ], Jianmin Wang

Using single-index ODEs to study dynamic gene regulatory network

Qi Zhang, Yao Yu, Jun Zhang, Hua Liang

NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples

Hua Yu, Bingke Jiao, [ ... ], Wei Liu

Prophetic Granger Causality to infer gene regulatory networks

Daniel E. Carlin, Evan O. Paull, [ ... ], Joshua M. Stuart

F-MAP: A Bayesian approach to infer the gene regulatory network using external hints

Maryam Shahdoust, Hamid Pezeshk, Hossein Mahjub, Mehdi Sadeghi

Identification of key microRNAs and genes in preeclampsia by bioinformatics analysis

Shouling Luo, Nannan Cao, Yao Tang, Weirong Gu

Construction and analyses of the microRNA-target gene differential regulatory network in thyroid carcinoma

Ying-ying Kang, Yang Liu, [ ... ], Zhi-Feng Cheng

Highly regulated growth and development of the Ediacara macrofossil Dickinsonia costata

Scott D. Evans, Mary L. Droser, James G. Gehling

Estimating optimal sparseness of developmental gene networks using a semi-quantitative model

Natsuhiro Ichinose, Tetsushi Yada, Hiroshi Wada

Coding and non-coding gene regulatory networks underlie the immune response in liver cirrhosis

Bo Gao, Xueming Zhang, [ ... ], Dongbo Xue

Identification of marginal causal relationships in gene networks from observational and interventional expression data

Gilles Monneret, Florence Jaffrézic, [ ... ], Grégory Nuel

A novel mutual information-based Boolean network inference method from time-series gene expression data

Shohag Barman, Yung-Keun Kwon

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