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Gene regulatory networks

Xprediction: Explainable EGFR-TKIs response prediction based on drug sensitivity specific gene networks

Heewon Park, Rui Yamaguchi, Seiya Imoto, Satoru Miyano

A novel network based linear model for prioritization of synergistic drug combinations

Jiaqi Li, Hongyan Xu, Richard A. McIndoe

The structure balance of gene-gene networks beyond pairwise interactions

Nastaran Allahyari, Amir Kargaran, Ali Hosseiny, G. R. Jafari

Transcription factor specificity limits the number of DNA-binding motifs

Ariel A. Aptekmann, Denys Bulavka, Alejandro D. Nadra, Ignacio E. Sánchez

A novel probabilistic generator for large-scale gene association networks

Tyler Grimes, Somnath Datta

RNA-sequencing of AVPV and ARH reveals vastly different temporal and transcriptomic responses to estradiol in the female rat hypothalamus

Margaret A. Mohr, Angela M. Wong, [ ... ], Paul E. Micevych

PEPN-GRN: A Petri net-based approach for the inference of gene regulatory networks from noisy gene expression data

Deepika Vatsa, Sumeet Agarwal

Emergence of co-expression in gene regulatory networks

Wencheng Yin, Luis Mendoza, [ ... ], Humberto Gutierrez

A mixture model to detect edges in sparse co-expression graphs with an application for comparing breast cancer subtypes

Haim Bar, Seojin Bang

Expression pattern determines regulatory logic

Carlos Mora-Martinez

Network preservation reveals shared and unique biological processes associated with chronic alcohol abuse in NAc and PFC

Eric Vornholt, John Drake, [ ... ], Vladimir I. Vladimirov

Global gene network exploration based on explainable artificial intelligence approach

Heewon Park, Koji Maruhashi, [ ... ], Satoru Miyano

Time-series transcriptomic analysis reveals novel gene modules that control theanine biosynthesis in tea plant (Camellia sinensis)

Haisheng Cao, Xiaolong He, [ ... ], Xiaochun Wan

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