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DNA structure

Novel pathway for mutagenic tautomerization of classical А∙Т DNA base pairs via sequential proton transfer through quasi-orthogonal transition states: A QM/QTAIM investigation

Ol’ha O. Brovarets’, Kostiantyn S. Tsiupa, Dmytro M. Hovorun

Deinococcus radiodurans PriA is a Pseudohelicase

Matthew E. Lopper, Jacob Boone, Christopher Morrow

MRN-dependent and independent pathways for recruitment of TOPBP1 to DNA double-strand breaks

Katrina Montales, Kenna Ruis, Howard Lindsay, W. Matthew Michael

A label-free G-quadruplex aptamer/gold nanoparticle-based colorimetric biosensor for rapid detection of bovine viral diarrhea virus genotype 1

Parisa Rabiei, Hassan Mohabatkar, Mandana Behbahani

p73, like its p53 homolog, shows preference for inverted repeats forming cruciforms

Jana Čechová, Jan Coufal, [ ... ], Václav Brázda

K⁺ promotes the favorable effect of polyamine on gene expression better than Na⁺

Takashi Nishio, Kaito Sugino, [ ... ], Kenichi Yoshikawa

Understanding the self-assembly dynamics of A/T absent ‘four-way DNA junctions with sticky ends’ at altered physiological conditions through molecular dynamics simulations

Akanksha Singh, Ramesh Kumar Yadav, [ ... ], Umesh Yadava

The effect of S-substitution at the O6-guanine site on the structure and dynamics of a DNA oligomer containing a G:T mismatch

Elaine Ann Moore, Yao-Zhong Xu

Sequence-Dependent T:G Base Pair Opening in DNA Double Helix Bound by Cren7, a Chromatin Protein Conserved among Crenarchaea

Lei Tian, Zhenfeng Zhang, [ ... ], Yong Gong

Multidimensional scaling methods can reconstruct genomic DNA loops using Hi-C data properties

Ryo Ishibashi

Biochemical properties of naturally occurring human bloom helicase variants

Rachel R. Cueny, Sameer Varma, Kristina H. Schmidt, James L. Keck

Two different and robustly modeled DNA binding modes of Competence Protein ComP - systematic modeling with AlphaFold 3, RoseTTAFold2NA, Chai-1 and re-docking in HADDOCK

Stian Aleksander Helsem, Kristian Alfsnes, [ ... ], Ole Herman Ambur

Cruciform DNA in mouse growing oocytes: Its dynamics and its relationship with DNA transcription

Xie Feng, Feng-Yun Xie, Xiang-Hong Ou, Jun-Yu Ma

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