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DNA structure

Predicting Target DNA Sequences of DNA-Binding Proteins Based on Unbound Structures

Chien-Yu Chen, Ting-Ying Chien, Chih-Kang Lin, Chih-Wei Lin, Yi-Zhong Weng, Darby Tien-Hao Chang

published 01 Feb 2012

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Structure-Function Studies of DNA Binding Domain of Response Regulator KdpE Reveals Equal Affinity Interactions at DNA Half-Sites

Anoop Narayanan, Lake N. Paul, Sakshi Tomar, Dipak N. Patil, Pravindra Kumar, Dinesh A. Yernool

published 23 Jan 2012

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The Werner Syndrome Protein Is Distinguished from the Bloom Syndrome Protein by Its Capacity to Tightly Bind Diverse DNA Structures

Ashwini Kamath-Loeb, Lawrence A. Loeb, Michael Fry

published 17 Jan 2012

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E-Cadherin Is Transcriptionally Activated via Suppression of ZEB1 Transcriptional Repressor by Small RNA-Mediated Gene Silencing

Minami Mazda, Kenji Nishi, Yuki Naito, Kumiko Ui-Tei

published 21 Dec 2011

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Innate Structure of DNA Foci Restricts the Mixing of DNA from Different Chromosome Territories

Pedro Olivares-Chauvet, Dorota Fennessy, Dean A. Jackson, Apolinar Maya-Mendoza

published 21 Dec 2011

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Exploiting a Reduced Set of Weighted Average Features to Improve Prediction of DNA-Binding Residues from 3D Structures

Yi Xiong, Junfeng Xia, Wen Zhang, Juan Liu

published 08 Dec 2011

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Localization of ASV Integrase-DNA Contacts by Site-Directed Crosslinking and their Structural Analysis

Elena Peletskaya, Mark Andrake, Alla Gustchina, George Merkel, Jerry Alexandratos, Dongwen Zhou, Ravi S. Bojja, Tadashi Satoh, Mikhail Potapov, Alex Kogon, Viktor Potapov, Alexander Wlodawer, Anna Marie Skalka

published 01 Dec 2011

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Disordering of Human Telomeric G-Quadruplex with Novel Antiproliferative Anthrathiophenedione

Dmitry Kaluzhny, Nikolay Ilyinsky, Andrei Shchekotikhin, Yuri Sinkevich, Philipp O. Tsvetkov, Vladimir Tsvetkov, Alexander Veselovsky, Mikhail Livshits, Olga Borisova, Alexander Shtil, Anna Shchyolkina

published 15 Nov 2011

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Methylation of the CpG Sites Only on the Sense Strand of the APC Gene Is Specific for Hepatocellular Carcinoma

Surbhi Jain, Ting-Tsung Chang, James P. Hamilton, Selena Y. Lin, Yih-Jyh Lin, Alison A. Evans, Florin M. Selaru, Pin- Wen Lin, Shun-Hua Chen, Timothy M. Block, Chi-Tan Hu, Wei Song, Stephen J. Meltzer, Ying-Hsiu Su

published 02 Nov 2011

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An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, Pedro I. Hidalgo-Yanes, Yunierkis Pérez-Castillo, Reinaldo Molina-Ruiz, Kathleen Marchal, Vítor Vasconcelos, Agostinho Antunes

published 26 Oct 2011

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A New Euler's Formula for DNA Polyhedra

Guang Hu, Wen-Yuan Qiu, Arnout Ceulemans

published 17 Oct 2011

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α,β-D-Constrained Nucleic Acids Are Strong Terminators of Thermostable DNA Polymerases in Polymerase Chain Reaction

Olivier Martínez, Vincent Ecochard, Sabrina Mahéo, Grégori Gross, Pierre Bodin, Justin Teissié, Jean-Marc Escudier, Laurent Paquereau

published 03 Oct 2011

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Divalent Metal Ion Differentially Regulates the Sequential Nicking Reactions of the GIY-YIG Homing Endonuclease I-BmoI

Benjamin P. Kleinstiver, Wesley Bérubé-Janzen, Andrew D. Fernandes, David R. Edgell

published 22 Aug 2011

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