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Database and informatics methods

Contrasting Patterns of Transposable Element Insertions in Drosophila Heat-Shock Promoters

Robert A. Haney, Martin E. Feder

Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

Wook Kim, Mark W. Silby, [ ... ], Stuart B. Levy

Phosphorylation of S776 and 14-3-3 Binding Modulate Ataxin-1 Interaction with Splicing Factors

Cesira de Chiara, Rajesh P. Menon, [ ... ], Annalisa Pastore

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Expression of the VP2 Protein of Murine Norovirus by a Translation Termination-Reinitiation Strategy

Sawsan Napthine, Robert A. Lever, [ ... ], Ian Brierley

An MHC-I Cytoplasmic Domain/HIV-1 Nef Fusion Protein Binds Directly to the μ Subunit of the AP-1 Endosomal Coat Complex

Rajendra Kumar Singh, David Lau, [ ... ], John C. Guatelli

Molecular Evolution of Drosophila Cuticular Protein Genes

R. Scott Cornman

Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis

Emmanuel Dias-Neto, Diana N. Nunes, [ ... ], Wadih Arap

A Biochemical Genomics Screen for Substrates of Ste20p Kinase Enables the In Silico Prediction of Novel Substrates

Robert B. Annan, Anna Y. Lee, [ ... ], David Y. Thomas

Bi-Directional SIFT Predicts a Subset of Activating Mutations

William Lee, Yan Zhang, [ ... ], Zemin Zhang

A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

Hepatitis C Virus (HCV) Genotype 1 Subtype Identification in New HCV Drug Development and Future Clinical Practice

Stéphane Chevaliez, Magali Bouvier-Alias, Rozenn Brillet, Jean-Michel Pawlotsky

PALM: A Paralleled and Integrated Framework for Phylogenetic Inference with Automatic Likelihood Model Selectors

Shu-Hwa Chen, Sheng-Yao Su, [ ... ], Chung-Yen Lin

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