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Database and informatics methods

Adaptation of HIV-1 Depends on the Host-Cell Environment

Tim van Opijnen, Anthony de Ronde, Maarten C. Boerlijst, Ben Berkhout

Evidence for Active Maintenance of Inverted Repeat Structures Identified by a Comparative Genomic Approach

Guoyan Zhao, Kuan Y. Chang, Katherine Varley, Gary D. Stormo

Tentative Mapping of Transcription-Induced Interchromosomal Interaction using Chimeric EST and mRNA Data

Per Unneberg, Jean-Michel Claverie

High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes

Noah Fahlgren, Miya D. Howell, [ ... ], James C. Carrington

The Identification of Lymphocyte-Like Cells and Lymphoid-Related Genes in Amphioxus Indicates the Twilight for the Emergency of Adaptive Immune System

Gonghua Huang, Xiaojin Xie, [ ... ], Anlong Xu

Ancient Origin of the New Developmental Superfamily DANGER

Nikolas Nikolaidis, Dimitra Chalkia, [ ... ], Randen L. Patterson

The Use of Coded PCR Primers Enables High-Throughput Sequencing of Multiple Homolog Amplification Products by 454 Parallel Sequencing

Jonas Binladen, M. Thomas P. Gilbert, [ ... ], Eske Willerslev

Biological Designer Self-Assembling Peptide Nanofiber Scaffolds Significantly Enhance Osteoblast Proliferation, Differentiation and 3-D Migration

Akihiro Horii, Xiumei Wang, Fabrizio Gelain, Shuguang Zhang

Insights into the Molecular Evolution of the PDZ/LIM Family and Identification of a Novel Conserved Protein Motif

Aartjan J.W. te Velthuis, Tadamoto Isogai, Lieke Gerrits, Christoph P. Bagowski

Vertebrate Vitellogenin Gene Duplication in Relation to the “3R Hypothesis”: Correlation to the Pelagic Egg and the Oceanic Radiation of Teleosts

Roderick Nigel Finn, Børge A. Kristoffersen

Designer Self-Assembling Peptide Nanofiber Scaffolds for Adult Mouse Neural Stem Cell 3-Dimensional Cultures

Fabrizio Gelain, Daniele Bottai, Angleo Vescovi, Shuguang Zhang

Towards Alignment Independent Quantitative Assessment of Homology Detection

Avihay Apatoff, Eddo Kim, Yossef Kliger

To Have or Not To Have a Pet for Better Health?

Leena K. Koivusilta, Ansa Ojanlatva

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