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Database and informatics methods

Empirical Evaluation of Oligonucleotide Probe Selection for DNA Microarrays

Jennifer G. Mulle, Viren C. Patel, [ ... ], Michael E. Zwick

Transcription of Human Resistin Gene Involves an Interaction of Sp1 with Peroxisome Proliferator-Activating Receptor Gamma (PPARγ)

Anil K. Singh, Aruna Battu, [ ... ], Nasreen Z. Ehtesham

Arabidopsis thaliana GYRB3 Does Not Encode a DNA Gyrase Subunit

Katherine M. Evans-Roberts, Christian Breuer, [ ... ], Anthony Maxwell

A Systems Biology Approach to Transcription Factor Binding Site Prediction

Xiang Zhou, Pavel Sumazin, Presha Rajbhandari, Andrea Califano

Oligomeric Interfaces Under the Lens: Gemini

Giovanni Feverati, Claire Lesieur

Discovery of Phytophthora infestans Genes Expressed in Planta through Mining of cDNA Libraries

Roberto Sierra, Luis M. Rodríguez-R, [ ... ], Silvia Restrepo

4E10-Resistant HIV-1 Isolated from Four Subjects with Rare Membrane-Proximal External Region Polymorphisms

Kyle J. Nakamura, Johannes S. Gach, [ ... ], Grace M. Aldrovandi

Dinucleotide Weight Matrices for Predicting Transcription Factor Binding Sites: Generalizing the Position Weight Matrix

Rahul Siddharthan

NSs Encoded by Groundnut Bud Necrosis Virus Is a Bifunctional Enzyme

Bhushan Lokesh, Panigrahi R. Rashmi, [ ... ], Handanahal S. Savithri

FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues

Ashish V. Tendulkar, Martin Krallinger, [ ... ], Alfonso Valencia

Evolutionary Constraints Acting on DDX3X Protein Potentially Interferes with Rev-Mediated Nuclear Export of HIV-1 RNA

Deepak Sharma, Jayanta Bhattacharya

Discovery of Novel MicroRNAs in Female Reproductive Tract Using Next Generation Sequencing

Chad J. Creighton, Ashley L. Benham, [ ... ], Preethi H. Gunaratne

An Extended Nomenclature for Mammalian V-ATPase Subunit Genes and Splice Variants

Kevin C. Miranda, Fiona E. Karet, Dennis Brown

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