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Cancer genomics

A multiple filter-wrapper feature selection algorithm based on process optimization mechanism for high-dimensional omics data analysis

Yongtao Shi, Yuefeng Zheng, Xiaotong Bai

Biologically-informed regional subset analysis with CatBoost for robust tissue-of-origin prediction

Sungmin Yang, Hong-Gee Kim

Analytical validation of a homologous recombination deficiency signature (HRDsig) in pan-tumor tissue samples

Wenshu Li, Jeffrey A. Leibowitz, [ ... ], Brennan Decker

In vivo investigation of STN1 downregulation in melanoma formation in adult mice following UV irradiation

Sara Knowles, Fang Wang, [ ... ], Weihang Chai

Personal approach for cancer treatment: A meta-analysis of Phase II clinical trials

Mikhail B. Potievskiy, Elena P. Zharova, [ ... ], Peter V. Shegai

Evaluation of therapeutic agent selection based on comprehensive genomic profiling in gastroenteropancreatic neuroendocrine neoplasms

Suguru Miyazawa, Hiroaki Ono, [ ... ], Minoru Tanabe

Epigenome and three-dimensional genome architecture remodeling during NDM29-mediated retro-transformation of neuroblastoma cells

Francesca Baldini, Aldo Pagano, [ ... ], Laura Vergani

Dissecting cell-free DNA fragmentation variation in tumors using cell line-derived xenograft mouse

Ruiqing Fu, He Amy Su, [ ... ], Daru Lu

Characterization and identification of extrachromosomal circular DNA in cholangiocarcinoma

Zar Zar Win, Hasaya Dokduang, [ ... ], Arporn Wangwiwatsin

Harmonizing and integrating the NCI Genomic Data Commons through accessible, interactive, and cloud-enabled workflows

Ling-Hong Hung, Bryce Fukuda, [ ... ], Ka Yee Yeung

Integrative analysis of SEPN1 in glioma: Prognostic roles, functional implications, and potential therapeutic interventions

Zisong Wang, Danwen Wang, [ ... ], Xiaoping Liu

Unlocking prognostic potential: A genomic signature of caloric restriction in patients with epithelial ovarian cancer

Ori Tal, Tamar Zahavi, Liat Anabel Sinberger, Mali Salmon-Divon

Clonal phylogenies inferred from bulk, single cell, and spatial transcriptomic analysis of epithelial cancers

Andrew Erickson, Sandy Figiel, [ ... ], Alastair D. Lamb

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