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Biological databases

Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches

Fumio Matsuda, Yoko Shinbo, [ ... ], Kazuki Saito

Sequence and Structure Signatures of Cancer Mutation Hotspots in Protein Kinases

Anshuman Dixit, Lin Yi, [ ... ], Gennady M. Verkhivker

Oncogene Mutations, Copy Number Gains and Mutant Allele Specific Imbalance (MASI) Frequently Occur Together in Tumor Cells

Junichi Soh, Naoki Okumura, [ ... ], Adi F. Gazdar

Empirical Bayes Analysis of Quantitative Proteomics Experiments

Adam A. Margolin, Shao-En Ong, [ ... ], Todd R. Golub

Structural and Functional Similarity between the Bacterial Type III Secretion System Needle Protein PrgI and the Eukaryotic Apoptosis Bcl-2 Proteins

Matthew D. Shortridge, Robert Powers

Searching for New Clues about the Molecular Cause of Endomyocardial Fibrosis by Way of In Silico Proteomics and Analytical Chemistry

Misaki Wayengera

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei-Yuan Qian

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, [ ... ], Forest Rohwer

The Repertoire of Heterotrimeric G Proteins and RGS Proteins in Ciona intestinalis

R. Prasobh, Narayanan Manoj

Systems Integration of Biodefense Omics Data for Analysis of Pathogen-Host Interactions and Identification of Potential Targets

Peter B. McGarvey, Hongzhan Huang, [ ... ], Cathy H. Wu

Proteomic Interrogation of Androgen Action in Prostate Cancer Cells Reveals Roles of Aminoacyl tRNA Synthetases

Adaikkalam Vellaichamy, Arun Sreekumar, [ ... ], Alexey I. Nesvizhskii

Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only

Jiangning Song, Hao Tan, [ ... ], James C. Whisstock

The FunGenES Database: A Genomics Resource for Mouse Embryonic Stem Cell Differentiation

Herbert Schulz, Raivo Kolde, [ ... ], for the “Functional genomics in embryonic stem cells” Consortium

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