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Biological databases

Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, [ ... ], Andras Fiser

Epidemiology of Doublet/Multiplet Mutations in Lung Cancers: Evidence that a Subset Arises by Chronocoordinate Events

Zhenbin Chen, Jinong Feng, Carolyn H. Buzin, Steve S. Sommer

FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

Cataloging Coding Sequence Variations in Human Genome Databases

Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim

MiR-433 and miR-127 Arise from Independent Overlapping Primary Transcripts Encoded by the miR-433-127 Locus

Guisheng Song, Li Wang

An Analysis of Human MicroRNA and Disease Associations

Ming Lu, Qipeng Zhang, [ ... ], Qinghua Cui

Genome Wide Identification of Recessive Cancer Genes by Combinatorial Mutation Analysis

Stefano Volinia, Nicoletta Mascellani, [ ... ], Carlo M. Croce

MetaSim—A Sequencing Simulator for Genomics and Metagenomics

Daniel C. Richter, Felix Ott, [ ... ], Daniel H. Huson

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, [ ... ], Ian Joint

Distilling Artificial Recombinants from Large Sets of Complete mtDNA Genomes

Qing-Peng Kong, Antonio Salas, [ ... ], Hans-Jürgen Bandelt

Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome

Ani Qu, Jennifer M. Brulc, [ ... ], Bryan A. White

Targeted Development of Registries of Biological Parts

Jean Peccoud, Megan F. Blauvelt, [ ... ], Sally A. Waldon

Contextual Specificity in Peptide-Mediated Protein Interactions

Amelie Stein, Patrick Aloy

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