Ten simple rules for designing analogue science games

Sam Illingworth, Paul Wake

PLOS Computational Biology: published June 10, 2021 | https://doi.org/10.1371/journal.pcbi.1009009

Ten simple rules for acing virtual interviews

Dalen Chan, Christina M. Fitzsimmons, Mariana D. Mandler, Pedro J. Batista

PLOS Computational Biology: published June 24, 2021 | https://doi.org/10.1371/journal.pcbi.1009057

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

Matthew R. Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W. Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R. Keefe, Jamie T. Morton, Renato R. M. Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vázquez-Baeza, Michal Ziemski, Hazuki E. Miwa, Terry A. Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D. Kaehler, Emily K. Cope, Jessica L. Metcalf, Michael S. Robeson II, Nicholas A. Bokulich, J. Gregory Caporaso

PLOS Computational Biology: published June 24, 2021 | https://doi.org/10.1371/journal.pcbi.1009056

Ten simple rules for doing a postdoc in pharma

Jitao David Zhang

PLOS Computational Biology: published June 3, 2021 | https://doi.org/10.1371/journal.pcbi.1008989

Reflecting on 20 years of breast cancer modeling in CISNET: Recommendations for future cancer systems modeling efforts

Amy Trentham-Dietz, Oguzhan Alagoz, Christina Chapman, Xuelin Huang, Jinani Jayasekera, Nicolien T. van Ravesteyn, Sandra J. Lee, Clyde B. Schechter, Jennifer M. Yeh, Sylvia K. Plevritis, Jeanne S. Mandelblatt, for the Breast Working Group of the Cancer Intervention and Surveillance Modeling Network (CISNET)

PLOS Computational Biology: published June 17, 2021 | https://doi.org/10.1371/journal.pcbi.1009020

Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth

Colton J. Lloyd, Jonathan Monk, Laurence Yang, Ali Ebrahim, Bernhard O. Palsson

PLOS Computational Biology: published June 23, 2021 | https://doi.org/10.1371/journal.pcbi.1007817

pyTFM: A tool for traction force and monolayer stress microscopy

Andreas Bauer, Magdalena Prechová, Lena Fischer, Ingo Thievessen, Martin Gregor, Ben Fabry

PLOS Computational Biology: published June 21, 2021 | https://doi.org/10.1371/journal.pcbi.1008364

Similar sensorimotor transformations control balance during standing and walking

Maarten Afschrift, Friedl De Groote, Ilse Jonkers

PLOS Computational Biology: published June 25, 2021 | https://doi.org/10.1371/journal.pcbi.1008369

Numerical evaluation reveals the effect of branching morphology on vessel transport properties during angiogenesis

Fatemeh Mirzapour-Shafiyi, Yukinori Kametani, Takao Hikita, Yosuke Hasegawa, Masanori Nakayama

PLOS Computational Biology: published June 16, 2021 | https://doi.org/10.1371/journal.pcbi.1008398

Bivalent chromatin as a therapeutic target in cancer: An in silico predictive approach for combining epigenetic drugs

Tomás Alarcón, Josep Sardanyés, Antoni Guillamon, Javier A. Menendez

PLOS Computational Biology: published June 21, 2021 | https://doi.org/10.1371/journal.pcbi.1008408

Paradoxical phase response of gamma rhythms facilitates their entrainment in heterogeneous networks

Xize Xu, Hermann Riecke

PLOS Computational Biology: published June 30, 2021 | https://doi.org/10.1371/journal.pcbi.1008575

Implications of diffusion and time-varying morphogen gradients for the dynamic positioning and precision of bistable gene expression boundaries

Melinda Liu Perkins

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1008589

Iliski, a software for robust calculation of transfer functions

Ali-Kemal Aydin, William D. Haselden, Julie Dang, Patrick J. Drew, Serge Charpak, Davide Boido

PLOS Computational Biology: published June 14, 2021 | https://doi.org/10.1371/journal.pcbi.1008614

How public reaction to disease information across scales and the impacts of vector control methods influence disease prevalence and control efficacy

Jing Jiao, Gonzalo P. Suarez, Nina H. Fefferman

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1008762

High-affinity P2Y₂ and low-affinity P2X₇ receptor interaction modulates ATP-mediated calcium signaling in murine osteoblasts

Nicholas Mikolajewicz, Delaney Smith, Svetlana V. Komarova, Anmar Khadra

PLOS Computational Biology: published June 21, 2021 | https://doi.org/10.1371/journal.pcbi.1008872

Embedding optimization reveals long-lasting history dependence in neural spiking activity

Lucas Rudelt, Daniel González Marx, Michael Wibral, Viola Priesemann

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1008927

Efficient representations of tumor diversity with paired DNA-RNA aberrations

Qian Ke, Wikum Dinalankara, Laurent Younes, Donald Geman, Luigi Marchionni

PLOS Computational Biology: published June 11, 2021 | https://doi.org/10.1371/journal.pcbi.1008944

Categorical judgments do not modify sensory representations in working memory

Long Luu, Alan A. Stocker

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1008968

Analogous computations in working memory input, output and motor gating: Electrophysiological and computational modeling evidence

Rachel Rac-Lubashevsky, Michael J. Frank

PLOS Computational Biology: published June 7, 2021 | https://doi.org/10.1371/journal.pcbi.1008971

netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysis

Michael Hellstern, Jing Ma, Kun Yue, Ali Shojaie

PLOS Computational Biology: published June 11, 2021 | https://doi.org/10.1371/journal.pcbi.1008979

An image-computable model of human visual shape similarity

Yaniv Morgenstern, Frieder Hartmann, Filipp Schmidt, Henning Tiedemann, Eugen Prokott, Guido Maiello, Roland W. Fleming

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1008981

Estimating the cumulative incidence of COVID-19 in the United States using influenza surveillance, virologic testing, and mortality data: Four complementary approaches

Fred S. Lu, Andre T. Nguyen, Nicholas B. Link, Mathieu Molina, Jessica T. Davis, Matteo Chinazzi, Xinyue Xiong, Alessandro Vespignani, Marc Lipsitch, Mauricio Santillana

PLOS Computational Biology: published June 17, 2021 | https://doi.org/10.1371/journal.pcbi.1008994

Growth rules for the repair of Asynchronous Irregular neuronal networks after peripheral lesions

Ankur Sinha, Christoph Metzner, Neil Davey, Roderick Adams, Michael Schmuker, Volker Steuber

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1008996

Estimation of country-level incidence of early-onset invasive Group B Streptococcus disease in infants using Bayesian methods

Bronner P. Gonçalves, Simon R. Procter, Sam Clifford, Artemis Koukounari, Proma Paul, Alexandra Lewin, Mark Jit, Joy Lawn

PLOS Computational Biology: published June 14, 2021 | https://doi.org/10.1371/journal.pcbi.1009001

A new phylodynamic model of Mycobacterium bovis transmission in a multi-host system uncovers the role of the unobserved reservoir

Anthony O’Hare, Daniel Balaz, David M. Wright, Carl McCormick, Stanley McDowell, Hannah Trewby, Robin A. Skuce, Rowland R. Kao

PLOS Computational Biology: published June 25, 2021 | https://doi.org/10.1371/journal.pcbi.1009005

Histone tails cooperate to control the breathing of genomic nucleosomes

Jan Huertas, Hans Robert Schöler, Vlad Cojocaru

PLOS Computational Biology: published June 3, 2021 | https://doi.org/10.1371/journal.pcbi.1009013

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine

Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn Grüning, Jeremy Goecks

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1009014

The functional role of sequentially neuromodulated synaptic plasticity in behavioural learning

Grace Wan Yu Ang, Clara S. Tang, Y. Audrey Hay, Sara Zannone, Ole Paulsen, Claudia Clopath

PLOS Computational Biology: published June 10, 2021 | https://doi.org/10.1371/journal.pcbi.1009017

Ion dynamics at the energy-deprived tripartite synapse

Manu Kalia, Hil G. E. Meijer, Stephan A. van Gils, Michel J. A. M. van Putten, Christine R. Rose

PLOS Computational Biology: published June 18, 2021 | https://doi.org/10.1371/journal.pcbi.1009019

Inclusion of maintenance energy improves the intracellular flux predictions of CHO

Diana Széliová, Jerneja Štor, Isabella Thiel, Marcus Weinguny, Michael Hanscho, Gabriele Lhota, Nicole Borth, Jürgen Zanghellini, David E. Ruckerbauer, Isabel Rocha

PLOS Computational Biology: published June 11, 2021 | https://doi.org/10.1371/journal.pcbi.1009022

Expectancy-based rhythmic entrainment as continuous Bayesian inference

Jonathan Cannon

PLOS Computational Biology: published June 9, 2021 | https://doi.org/10.1371/journal.pcbi.1009025

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Learning divisive normalization in primary visual cortex

Max F. Burg, Santiago A. Cadena, George H. Denfield, Edgar Y. Walker, Andreas S. Tolias, Matthias Bethge, Alexander S. Ecker

PLOS Computational Biology: published June 7, 2021 | https://doi.org/10.1371/journal.pcbi.1009028

Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy

Chad R. Wells, Youfang Cao, David P. Durham, Siddappa N. Byrareddy, Aftab A. Ansari, Nancy H. Ruddle, Jeffrey P. Townsend, Alison P. Galvani, Alan S. Perelson

PLOS Computational Biology: published June 9, 2021 | https://doi.org/10.1371/journal.pcbi.1009031

Quantifying cell transitions in C. elegans with data-fitted landscape models

Elena Camacho-Aguilar, Aryeh Warmflash, David A. Rand

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1009034

Unsupervised logic-based mechanism inference for network-driven biological processes

Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez

PLOS Computational Biology: published June 2, 2021 | https://doi.org/10.1371/journal.pcbi.1009035

Ten simple rules for making a vocabulary FAIR

Simon J. D. Cox, Alejandra N. Gonzalez-Beltran, Barbara Magagna, Maria-Cristina Marinescu

PLOS Computational Biology: published June 16, 2021 | https://doi.org/10.1371/journal.pcbi.1009041

Three-dimensional topology optimization model to simulate the external shapes of bone

Misaki Sakashita, Shintaro Yamasaki, Kentaro Yaji, Atsushi Kawamoto, Shigeru Kondo

PLOS Computational Biology: published June 16, 2021 | https://doi.org/10.1371/journal.pcbi.1009043

TSCCA: A tensor sparse CCA method for detecting microRNA-gene patterns from multiple cancers

Wenwen Min, Tsung-Hui Chang, Shihua Zhang, Xiang Wan

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1009044

Thalamo-cortical spiking model of incremental learning combining perception, context and NREM-sleep

Bruno Golosio, Chiara De Luca, Cristiano Capone, Elena Pastorelli, Giovanni Stegel, Gianmarco Tiddia, Giulia De Bonis, Pier Stanislao Paolucci

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1009045

The visual cortex produces gamma band echo in response to broadband visual flicker

Alexander Zhigalov, Katharina Duecker, Ole Jensen

PLOS Computational Biology: published June 1, 2021 | https://doi.org/10.1371/journal.pcbi.1009046

Stochastic optimal feedforward-feedback control determines timing and variability of arm movements with or without vision

Bastien Berret, Adrien Conessa, Nicolas Schweighofer, Etienne Burdet

PLOS Computational Biology: published June 11, 2021 | https://doi.org/10.1371/journal.pcbi.1009047

GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction

Zhong Li, Kaiyancheng Jiang, Shengwei Qin, Yijun Zhong, Arne Elofsson

PLOS Computational Biology: published June 3, 2021 | https://doi.org/10.1371/journal.pcbi.1009048

Effect of cellular rearrangement time delays on the rheology of vertex models for confluent tissues

Gonca Erdemci-Tandogan, M. Lisa Manning

PLOS Computational Biology: published June 7, 2021 | https://doi.org/10.1371/journal.pcbi.1009049

Modeling influenza seasonality in the tropics and subtropics

Haokun Yuan, Sarah C. Kramer, Eric H. Y. Lau, Benjamin J. Cowling, Wan Yang

PLOS Computational Biology: published June 9, 2021 | https://doi.org/10.1371/journal.pcbi.1009050

Efficient encoding of spectrotemporal information for bat echolocation

Adarsh Chitradurga Achutha, Herbert Peremans, Uwe Firzlaff, Dieter Vanderelst

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1009052

A physicochemical model of odor sampling

Mitchell E. Gronowitz, Adam Liu, Qiang Qiu, C. Ron Yu, Thomas A. Cleland

PLOS Computational Biology: published June 11, 2021 | https://doi.org/10.1371/journal.pcbi.1009054

A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2

Edward M. Hill, Benjamin D. Atkins, Matt J. Keeling, Louise Dyson, Michael J. Tildesley

PLOS Computational Biology: published June 16, 2021 | https://doi.org/10.1371/journal.pcbi.1009058

coupleCoC+: An information-theoretic co-clustering-based transfer learning framework for the integrative analysis of single-cell genomic data

Pengcheng Zeng, Zhixiang Lin

PLOS Computational Biology: published June 2, 2021 | https://doi.org/10.1371/journal.pcbi.1009064

BIO-LGCA: A cellular automaton modelling class for analysing collective cell migration

Andreas Deutsch, Josué Manik Nava-Sedeño, Simon Syga, Haralampos Hatzikirou

PLOS Computational Biology: published June 15, 2021 | https://doi.org/10.1371/journal.pcbi.1009066

How does feedback from phage infections influence the evolution of phase variation in Campylobacter?

Simran K. Sandhu, Christopher D. Bayliss, Andrew Yu. Morozov

PLOS Computational Biology: published June 14, 2021 | https://doi.org/10.1371/journal.pcbi.1009067

Free energy landscape of RNA binding dynamics in start codon recognition by eukaryotic ribosomal pre-initiation complex

Takeru Kameda, Katsura Asano, Yuichi Togashi

PLOS Computational Biology: published June 14, 2021 | https://doi.org/10.1371/journal.pcbi.1009068

PHENSIM: Phenotype Simulator

Salvatore Alaimo, Rosaria Valentina Rapicavoli, Gioacchino P. Marceca, Alessandro La Ferlita, Oksana B. Serebrennikova, Philip N. Tsichlis, Bud Mishra, Alfredo Pulvirenti, Alfredo Ferro

PLOS Computational Biology: published June 24, 2021 | https://doi.org/10.1371/journal.pcbi.1009069

Novelty is not surprise: Human exploratory and adaptive behavior in sequential decision-making

He A. Xu, Alireza Modirshanechi, Marco P. Lehmann, Wulfram Gerstner, Michael H. Herzog

PLOS Computational Biology: published June 3, 2021 | https://doi.org/10.1371/journal.pcbi.1009070

CytoPy: An autonomous cytometry analysis framework

Ross J. Burton, Raya Ahmed, Simone M. Cuff, Sarah Baker, Andreas Artemiou, Matthias Eberl

PLOS Computational Biology: published June 8, 2021 | https://doi.org/10.1371/journal.pcbi.1009071

Examining the dynamics of Epstein-Barr virus shedding in the tonsils and the impact of HIV-1 coinfection on daily saliva viral loads

Catherine M. Byrne, Christine Johnston, Jackson Orem, Fred Okuku, Meei-Li Huang, Habibur Rahman, Anna Wald, Lawrence Corey, Joshua T. Schiffer, Corey Casper, Daniel Coombs, Soren Gantt

PLOS Computational Biology: published June 21, 2021 | https://doi.org/10.1371/journal.pcbi.1009072

Optimizing mitochondrial maintenance in extended neuronal projections

Anamika Agrawal, Elena F. Koslover

PLOS Computational Biology: published June 9, 2021 | https://doi.org/10.1371/journal.pcbi.1009073

Multiple morphogens and rapid elongation promote segmental patterning during development

Yuchi Qiu, Lianna Fung, Thomas F. Schilling, Qing Nie

PLOS Computational Biology: published June 23, 2021 | https://doi.org/10.1371/journal.pcbi.1009077

lra: A long read aligner for sequences and contigs

Jingwen Ren, Mark J. P. Chaisson

PLOS Computational Biology: published June 21, 2021 | https://doi.org/10.1371/journal.pcbi.1009078

Mechanism of collagen folding propagation studied by Molecular Dynamics simulations

Julian Hartmann, Martin Zacharias

PLOS Computational Biology: published June 8, 2021 | https://doi.org/10.1371/journal.pcbi.1009079

Modeling the impact of single-cell stochasticity and size control on the population growth rate in asymmetrically dividing cells

Felix Barber, Jiseon Min, Andrew W. Murray, Ariel Amir

PLOS Computational Biology: published June 21, 2021 | https://doi.org/10.1371/journal.pcbi.1009080

Multiscale modeling of tumor growth and angiogenesis: Evaluation of tumor-targeted therapy

Sahar Jafari Nivlouei, M. Soltani, João Carvalho, Rui Travasso, Mohammad Reza Salimpour, Ebrahim Shirani

PLOS Computational Biology: published June 23, 2021 | https://doi.org/10.1371/journal.pcbi.1009081

Analyzing cancer gene expression data through the lens of normal tissue-specificity

H. Robert Frost

PLOS Computational Biology: published June 18, 2021 | https://doi.org/10.1371/journal.pcbi.1009085

Mixture-of-Experts Variational Autoencoder for clustering and generating from similarity-based representations on single cell data

Andreas Kopf, Vincent Fortuin, Vignesh Ram Somnath, Manfred Claassen

PLOS Computational Biology: published June 30, 2021 | https://doi.org/10.1371/journal.pcbi.1009086

A zero inflated log-normal model for inference of sparse microbial association networks

Vincent Prost, Stéphane Gazut, Thomas Brüls

PLOS Computational Biology: published June 18, 2021 | https://doi.org/10.1371/journal.pcbi.1009089

A549 in-silico 1.0: A first computational model to simulate cell cycle dependent ion current modulation in the human lung adenocarcinoma

Sonja Langthaler, Theresa Rienmüller, Susanne Scheruebel, Brigitte Pelzmann, Niroj Shrestha, Klaus Zorn-Pauly, Wolfgang Schreibmayer, Andrew Koff, Christian Baumgartner

PLOS Computational Biology: published June 22, 2021 | https://doi.org/10.1371/journal.pcbi.1009091

Designing microbial communities to maximize the thermodynamic driving force for the production of chemicals

Pavlos Stephanos Bekiaris, Steffen Klamt

PLOS Computational Biology: published June 15, 2021 | https://doi.org/10.1371/journal.pcbi.1009093

Topological data analysis distinguishes parameter regimes in the Anderson-Chaplain model of angiogenesis

John T. Nardini, Bernadette J. Stolz, Kevin B. Flores, Heather A. Harrington, Helen M. Byrne

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1009094

Identifying the combinatorial control of signal-dependent transcription factors

Ning Wang, Diane Lefaudeux, Anup Mazumder, Jingyi Jessica Li, Alexander Hoffmann

PLOS Computational Biology: published June 24, 2021 | https://doi.org/10.1371/journal.pcbi.1009095

Agent-based modeling of the central amygdala and pain using cell-type specific physiological parameters

Rachael Miller Neilan, Gabrielle Majetic, Mauricio Gil-Silva, Anisha P. Adke, Yarimar Carrasquillo, Benedict J. Kolber

PLOS Computational Biology: published June 8, 2021 | https://doi.org/10.1371/journal.pcbi.1009097

Methodology for rigorous modeling of protein conformational changes by Rosetta using DEER distance restraints

Diego del Alamo, Kevin L. Jagessar, Jens Meiler, Hassane S. Mchaourab

PLOS Computational Biology: published June 16, 2021 | https://doi.org/10.1371/journal.pcbi.1009107

Mass spectrometry and machine learning for the accurate diagnosis of benzylpenicillin and multidrug resistance of Staphylococcus aureus in bovine mastitis

Necati Esener, Alexandre Maciel-Guerra, Katharina Giebel, Daniel Lea, Martin J. Green, Andrew J. Bradley, Tania Dottorini

PLOS Computational Biology: published June 11, 2021 | https://doi.org/10.1371/journal.pcbi.1009108

A computational grid-to-place-cell transformation model indicates a synaptic driver of place cell impairment in early-stage Alzheimer’s Disease

Natalie Ness, Simon R. Schultz

PLOS Computational Biology: published June 16, 2021 | https://doi.org/10.1371/journal.pcbi.1009115

SDImpute: A statistical block imputation method based on cell-level and gene-level information for dropouts in single-cell RNA-seq data

Jing Qi, Yang Zhou, Zicen Zhao, Shuilin Jin

PLOS Computational Biology: published June 17, 2021 | https://doi.org/10.1371/journal.pcbi.1009118

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De novo mutational signature discovery in tumor genomes using SparseSignatures

Avantika Lal, Keli Liu, Robert Tibshirani, Arend Sidow, Daniele Ramazzotti

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1009119

Contrasting factors associated with COVID-19-related ICU admission and death outcomes in hospitalised patients by means of Shapley values

Massimo Cavallaro, Haseeb Moiz, Matt J. Keeling, Noel D. McCarthy

PLOS Computational Biology: published June 23, 2021 | https://doi.org/10.1371/journal.pcbi.1009121

Contact tracing efficiency, transmission heterogeneity, and accelerating COVID-19 epidemics

Billy J. Gardner, A. Marm Kilpatrick

PLOS Computational Biology: published June 17, 2021 | https://doi.org/10.1371/journal.pcbi.1009122

Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells

Cemal Erdem, Adrian V. Lee, D. Lansing Taylor, Timothy R. Lezon

PLOS Computational Biology: published June 30, 2021 | https://doi.org/10.1371/journal.pcbi.1009125

Multidimensional analysis and detection of informative features in human brain white matter

Adam Richie-Halford, Jason D. Yeatman, Noah Simon, Ariel Rokem

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1009136

A computational model of pig ventricular cardiomyocyte electrophysiology and calcium handling: Translation from pig to human electrophysiology

Namit Gaur, Xiao-Yan Qi, David Benoist, Olivier Bernus, Ruben Coronel, Stanley Nattel, Edward J. Vigmond

PLOS Computational Biology: published June 30, 2021 | https://doi.org/10.1371/journal.pcbi.1009137

Behavioral correlates of cortical semantic representations modeled by word vectors

Satoshi Nishida, Antoine Blanc, Naoya Maeda, Masataka Kado, Shinji Nishimoto

PLOS Computational Biology: published June 23, 2021 | https://doi.org/10.1371/journal.pcbi.1009138

Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem

Jumpei F. Yamagishi, Nen Saito, Kunihiko Kaneko

PLOS Computational Biology: published June 23, 2021 | https://doi.org/10.1371/journal.pcbi.1009143

Rate-dependent effects of lidocaine on cardiac dynamics: Development and analysis of a low-dimensional drug-channel interaction model

Steffen S. Docken, Colleen E. Clancy, Timothy J. Lewis

PLOS Computational Biology: published June 29, 2021 | https://doi.org/10.1371/journal.pcbi.1009145

Regulating synchronous oscillations of cerebellar granule cells by different types of inhibition

Yuanhong Tang, Lingling An, Quan Wang, Jian K. Liu

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1009163

Simulation of angiogenesis in three dimensions: Application to cerebral cortex

Jonathan P. Alberding, Timothy W. Secomb

PLOS Computational Biology: published June 25, 2021 | https://doi.org/10.1371/journal.pcbi.1009164

Molecular signatures of silencing suppression degeneracy from a complex RNA virus

Silvia Ambrós, Neus Gómez-Muñoz, Silvia Giménez-Santamarina, Javier Sánchez-Vicente, Josep Navarro-López, Fernando Martínez, José-Antonio Daròs, Guillermo Rodrigo

PLOS Computational Biology: published June 28, 2021 | https://doi.org/10.1371/journal.pcbi.1009166

Correction: A new model for simultaneous dimensionality reduction and time-varying functional connectivity estimation

The PLOS Computational Biology Staff

PLOS Computational Biology: published June 8, 2021 | https://doi.org/10.1371/journal.pcbi.1009112

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