Astrocytes influence cortical synaptic plasticity during postnatal development. The computational study by Manninen et al. links for the first time the interactions of complex molecular and cellular mechanisms of a fine astrocyte process (yellow) with neuronal presynaptic (red) and postsynaptic (cyan) sites to the time window of spike-timing-dependent long-term depression. The astrocyte is sensing the postsynaptic release of endocannabinoid and is modulating the presynaptic release of glutamate via astrocytic glutamate exocytosis affecting presynaptic NMDA receptor-mediated second messenger cascades.
Image Credit: Marja-Leena Linne, Ausra Saudargiene, Tiina Manninen, Noora Pihlajarinne
Editorials
Ten simple rules for writing Dockerfiles for reproducible data science
PLOS Computational Biology: published November 10, 2020 | https://doi.org/10.1371/journal.pcbi.1008316
Ten simple rules for writing a paper about scientific software
PLOS Computational Biology: published November 12, 2020 | https://doi.org/10.1371/journal.pcbi.1008390
Ten simple rules for starting research in your late teens
PLOS Computational Biology: published November 19, 2020 | https://doi.org/10.1371/journal.pcbi.1008403
Education
Twelve quick steps for genome assembly and annotation in the classroom
PLOS Computational Biology: published November 12, 2020 | https://doi.org/10.1371/journal.pcbi.1008325
Perspective
Ten simple rules for increased lab resilience
PLOS Computational Biology: published November 19, 2020 | https://doi.org/10.1371/journal.pcbi.1008313
Review
Transforming the study of organisms: Phenomic data models and knowledge bases
PLOS Computational Biology: published November 24, 2020 | https://doi.org/10.1371/journal.pcbi.1008376
Research Articles
Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex
PLOS Computational Biology: published November 10, 2020 | https://doi.org/10.1371/journal.pcbi.1008360
Deep learning predicts short non-coding RNA functions from only raw sequence data
PLOS Computational Biology: published November 11, 2020 | https://doi.org/10.1371/journal.pcbi.1008415
Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy
PLOS Computational Biology: published November 11, 2020 | https://doi.org/10.1371/journal.pcbi.1008184
Using B cell receptor lineage structures to predict affinity
PLOS Computational Biology: published November 11, 2020 | https://doi.org/10.1371/journal.pcbi.1008391
Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms
PLOS Computational Biology: published November 11, 2020 | https://doi.org/10.1371/journal.pcbi.1008227
Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines
PLOS Computational Biology: published November 12, 2020 | https://doi.org/10.1371/journal.pcbi.1008354
Speed of phototransduction in the microvillus regulates the accuracy and bandwidth of the rhabdomeric photoreceptor
PLOS Computational Biology: published November 16, 2020 | https://doi.org/10.1371/journal.pcbi.1008427
Validation of DBFOLD: An efficient algorithm for computing folding pathways of complex proteins
PLOS Computational Biology: published November 16, 2020 | https://doi.org/10.1371/journal.pcbi.1008323
Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus
PLOS Computational Biology: published November 16, 2020 | https://doi.org/10.1371/journal.pcbi.1008356
BioAFMviewer: An interactive interface for simulated AFM scanning of biomolecular structures and dynamics
PLOS Computational Biology: published November 18, 2020 | https://doi.org/10.1371/journal.pcbi.1008444
DeepPheno: Predicting single gene loss-of-function phenotypes using an ontology-aware hierarchical classifier
PLOS Computational Biology: published November 18, 2020 | https://doi.org/10.1371/journal.pcbi.1008453
Systems biology informed deep learning for inferring parameters and hidden dynamics
PLOS Computational Biology: published November 18, 2020 | https://doi.org/10.1371/journal.pcbi.1007575
Evolution of multicellular life cycles under costly fragmentation
PLOS Computational Biology: published November 19, 2020 | https://doi.org/10.1371/journal.pcbi.1008406
Modeling HIV-1 infection in the brain
PLOS Computational Biology: published November 19, 2020 | https://doi.org/10.1371/journal.pcbi.1008305
EventEpi—A natural language processing framework for event-based surveillance
PLOS Computational Biology: published November 20, 2020 | https://doi.org/10.1371/journal.pcbi.1008277
Poisson balanced spiking networks
PLOS Computational Biology: published November 20, 2020 | https://doi.org/10.1371/journal.pcbi.1008261
A dual-feedback loop model of the mammalian circadian clock for multi-input control of circadian phase
PLOS Computational Biology: published November 23, 2020 | https://doi.org/10.1371/journal.pcbi.1008459
Within-host mechanisms of immune regulation explain the contrasting dynamics of two helminth species in both single and dual infections
PLOS Computational Biology: published November 23, 2020 | https://doi.org/10.1371/journal.pcbi.1008438
Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions
PLOS Computational Biology: published November 23, 2020 | https://doi.org/10.1371/journal.pcbi.1008397
Breaking the circularity in circular analyses: Simulations and formal treatment of the flattened average approach
PLOS Computational Biology: published November 23, 2020 | https://doi.org/10.1371/journal.pcbi.1008286
In silico prediction of ARB resistance: A first step in creating personalized ARB therapy
PLOS Computational Biology: published November 25, 2020 | https://doi.org/10.1371/journal.pcbi.1007719
Phenotypes to remember: Evolutionary developmental memory capacity and robustness
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008425
Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008386
Acetate and glycerol are not uniquely suited for the evolution of cross-feeding in E. coli
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008433
Deconvolution of heterogeneous tumor samples using partial reference signals
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008452
Pre-existing resistance in the latent reservoir can compromise VRC01 therapy during chronic HIV-1 infection
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008434
Dopamine release, diffusion and uptake: A computational model for synaptic and volume transmission
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008410
Inferring a network from dynamical signals at its nodes
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008435
Inference of mutability landscapes of tumors from single cell sequencing data
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008454
Identifying longevity associated genes by integrating gene expression and curated annotations
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008429
The role of sensory uncertainty in simple contour integration
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1006308
Remote homology search with hidden Potts models
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008085
Biological network growth in complex environments: A computational framework
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008003
Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008422
An exact method for quantifying the reliability of end-of-epidemic declarations in real time
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008478
Precise determination of input-output mapping for multimodal gene circuits using data from transient transfection
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008389
Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008291
Model-based decoupling of evoked and spontaneous neural activity in calcium imaging data
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008330
Modelling pathogen spread in a healthcare network: Indirect patient movements
PLOS Computational Biology: published November 30, 2020 | https://doi.org/10.1371/journal.pcbi.1008442