Annotating functional effects of non-coding variants in neuropsychiatric cell types by deep transfer learning
Fig 6
Likely causal variant rs2304205 and its MetaChrom functional annotations.
The candidate SNP rs2304205 is chose as the reference variant for computing LD and it is highlighted by the red dash line in each panel. The upper panel shows significance of GWAS SNPs, LD between SNPs and genes in this region. The next panel shows credible set SNPs identified by fine-mapping (PIPs) in this region. The remaining panels show MetaChrom scores in four cell types, two in fetal stage (FB OCR and Glut) and two in adult stage (VLPEC neuron and PUT neuron).