Optimal tuning of weighted kNN- and diffusion-based methods for denoising single cell genomics data

• Andreas Tjärnberg ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: andreas.tjarnberg@nyu.edu (AT); rb133@nyu.edu (RAB)

  Affiliations Center for Developmental Genetics, New York University, New York, New York, USA, Center For Genomics and Systems Biology, NYU, New York, New York, USA, Department of Biology, NYU, New York, New York, USA

  https://orcid.org/0000-0003-0064-1791

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• Omar Mahmood ,

  Contributed equally to this work with: Omar Mahmood, Christopher A. Jackson

  Roles Formal analysis, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Center For Data Science, NYU, New York, New York, USA

  https://orcid.org/0000-0002-4437-5416

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• Christopher A. Jackson ,

  Contributed equally to this work with: Omar Mahmood, Christopher A. Jackson

  Roles Data curation, Formal analysis, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Center For Genomics and Systems Biology, NYU, New York, New York, USA, Department of Biology, NYU, New York, New York, USA

  https://orcid.org/0000-0002-8769-2710

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• Giuseppe-Antonio Saldi,

  Roles Software

  Affiliation Center For Genomics and Systems Biology, NYU, New York, New York, USA

  https://orcid.org/0000-0002-9994-7354

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• Kyunghyun Cho,

  Roles Supervision, Writing – original draft, Writing – review & editing

  Affiliations Flatiron Institute, Center for Computational Biology, Simons Foundation, New York, New York, USA, Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, New York, USA

  https://orcid.org/0000-0003-1669-3211

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• Lionel A. Christiaen,

  Roles Resources, Supervision, Writing – original draft, Writing – review & editing

  Affiliations Center for Developmental Genetics, New York University, New York, New York, USA, Department of Biology, NYU, New York, New York, USA

  https://orcid.org/0000-0001-5930-5667

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• Richard A. Bonneau

  Roles Conceptualization, Investigation, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: andreas.tjarnberg@nyu.edu (AT); rb133@nyu.edu (RAB)

  Affiliations Center For Genomics and Systems Biology, NYU, New York, New York, USA, Department of Biology, NYU, New York, New York, USA, Center For Data Science, NYU, New York, New York, USA, Flatiron Institute, Center for Computational Biology, Simons Foundation, New York, New York, USA, Courant Institute of Mathematical Sciences, Computer Science Department, New York University, New York, New York, USA

  https://orcid.org/0000-0003-4354-7906

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