ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections

Open Access

Peer-reviewed

Research Article

Leonid Chindelevitch ,

* E-mail: leonid@sfu.ca

Affiliation Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America
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Caroline Colijn,

Affiliation Department of Mathematics, Imperial College, London, United Kingdom
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Prashini Moodley,

Affiliation School of Laboratory Medicine and Medical Sciences, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa
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Douglas Wilson,

Affiliations Department of Medicine, Edendale Hospital, Pietermaritzberg, South Africa, Nelson R Mandela School of Medicine, University of KwaZulu-Natal, Durban, South Africa
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Ted Cohen

Affiliation Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America
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Tandem repeats
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Mycobacterium tuberculosis
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Genotyping
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Bacterial pathogens
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Fungal evolution
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Copy number variation
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Pathogens
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Tuberculosis
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