Peer Review History
| Original SubmissionDecember 15, 2025 |
|---|
|
-->-->PPATHOGENS-D-25-03185 Excessive C5 conversion prevents C9 polymerisation and subsequent MAC-dependent killing of Klebsiella pneumoniae PLOS Pathogens Dear Dr. Bardoel, Thank you for submitting your manuscript to PLOS Pathogens. After careful consideration, we feel that it has merit but does not fully meet PLOS Pathogens's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 10 2026 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plospathogens@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/ppathogens/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to any formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Leigh Knodler Academic Editor PLOS Pathogens David Skurnik Section Editor PLOS Pathogens --> Sumita Bhaduri-McIntosh Editor-in-Chief PLOS Pathogens orcid.org/0000-0003-2946-9497 Michael Malim -->Editor-in-Chief PLOS Pathogens orcid.org/0000-0002-7699-2064 Journal Requirements: If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise. 1) Please ensure that the CRediT author contributions listed for every co-author are completed accurately and in full. At this stage, the following Authors/Authors require contributions: Kulsum Mehboob Dawoodbhoy, Panagiotis Theofilidis, Frerich M. Masson, Michiel van der Flier, Suzan H. M. Rooijakkers, Bart W. Bardoel, and Dennis J. Doorduijn. Please ensure that the full contributions of each author are acknowledged in the "Add/Edit/Remove Authors" section of our submission form. The list of CRediT author contributions may be found here: https://journals.plos.org/plospathogens/s/authorship#loc-author-contributions 2) We have noticed that you have uploaded Supporting Information files, but you have not included a list of legends. Please add a full list of legends for your Supporting Information files after the references list. 3) We notice that your supplementary figures are uploaded with the file type 'Figure'. Please amend the file type to 'Supporting Information'. Please ensure that each Supporting Information file has a legend listed in the manuscript after the references list. 4) In the online submission form, you indicated that This paper does not report original code. Any additional information required to reanalyse the data reported in this paper is available from the lead contact upon request.. All PLOS journals now require all data underlying the findings described in their manuscript to be freely available to other researchers, either 1. In a public repository 2. Within the manuscript itself 3. Uploaded as supplementary information. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If your data cannot be made publicly available for ethical or legal reasons (e.g., public availability would compromise patient privacy), please explain your reasons by return email and your exemption request will be escalated to the editor for approval. Your exemption request will be handled independently and will not hold up the peer review process, but will need to be resolved should your manuscript be accepted for publication. One of the Editorial team will then be in touch if there are any issues. Reviewers' Comments: Reviewer's Responses to Questions Part I - Summary Please use this section to discuss strengths/weaknesses of study, novelty/significance, general execution and scholarship. Reviewer #1: This is a nicely done study assessing the roles of C5 cleavage, C9:C5 ratios, and antibody mediated C5 cleavage in MAC-dependent killing of Klebsiella pneumonia strains in vitro. I particularly think that the data on antibody titration is crucial to the field. The discussion is very well written but I had some challenges following the results and methods as described below. I have also a few general notes/comments for the authors. Reviewer #2: The manuscript investigates the mechanism by which some Klebsiella pneumoniae strains are more resistant to MAC-dependent killing. They perform several experiments and find that excessive C5 conversion limits C9 polymerization and subsequent killing. Supplementing C9 restores pathogen killing. The results are particularly dramatic in sera from neonates, which are naturally C9-deficient and more susceptible to infection by Kpn and other microbes. Overall, this is an important manuscript that sheds new light on mechanisms of complement activation and bacterial killing. The experiments are well conducted and overall, well interpreted. The discussion is balanced and addresses limitation of the work. I have a few minor comments below ********** Part II – Major Issues: Key Experiments Required for Acceptance Please use this section to detail the key new experiments or modifications of existing experiments that should be absolutely required to validate study conclusions. Generally, there should be no more than 3 such required experiments or major modifications for a "Major Revision" recommendation. If more than 3 experiments are necessary to validate the study conclusions, then you are encouraged to recommend "Reject". Reviewer #1: 1. Could the authors provide additional details on how the KP strains were selected? KP have significant genetic heterogeneity based on capsule composition that may influence MAC killing so additional details would be helpful re: generalizability. The authors have provided K type and O antigen type, which is helpful, but additional information that may also help the field would be sequence type, antibiotic resistance profiles (if these are clinical or multi-drug resistant), additional details on unpublished strains, clinical isolate versus laboratory strain, etc. 2. The strain nomenclature is challenging to follow - for example, what does Kp01_1 vs. Kp01_2 mean? Recommend simplifying the nomenclature or perhaps grouping by biology (e.g. by O antigen type). Also, Table S1 should probably be included in the main text. 3. I have used 5% NHS in complement binding assays but not for killing assays - it appears the serum was allowed to kill overnight? If I understand their assay correctly, I would be interested to know if similar effects could be seen at shorter timepoints (e.g. 30 minutes) and higher serum concentrations that maybe more “physiologic.” I think higher concentrations are particularly important to test. If the authors are willing, I would perhaps target their efforts to only a key experiment or two? Reviewer #2: 1. Figure and legends need to better clarify the number of samples used; this is not always evident, and in some figures, this is not sufficient. For example, in Figure 1b: it seems that some data points were performing with only an n=2, which is not sufficient. The experiments need to be repeated with an n=3 at the very minimum. Similarly, in Fig. 1c, it is unclear how many samples were used for each time point. This is true for all figures where the averages were shown. ********** Part III – Minor Issues: Editorial and Data Presentation Modifications Please use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. Reviewer #1: 1. Figure 2C - I am confused by this figure - I think this is another way to represent their findings in 2A. But if they are representing “killing” should it not be the initial inoculum - final yield for each strain and then measure that ratio for each strain? Rather than just calculating ratio of final yield? If that is what the authors did, it was not immediately clear. Also, would a ratio <1 indicate impaired killing? That would be how I interpret a ratio, which is not consistent with 2A. 2. Minor point: I am not particularly concerned with statistical significance when the authors are showing multi-log differences in bacterial killing but in Figure 2a there seems to be minimal changes that influence their results. Would a non-parametric test like Mann-Whitney change statistical significance? This is a minor point. 3. Lines 466-468: Regarding neonatal supplementation of C9, would recommend testing in pre-clinical animal models to assess its effect in vivo. 4. For future submissions, It would be helpful to have figure legends co-located with the figures. Or at the end of the text rather than embedded in the text without the adjacent figure. Reviewer #2: 2. The strains in figure 2 belong to many O and K antigens. Given that capsules are important for complement resistance, can the authors include any information on the K antigens of the strains? Are some of the strains hypermucoviscous? Some appear to be quite resistant to killing. 3. In Fig. 4D, it seems that killing is not restored to baseline levels without C9 even when IgG1 UKpn2 is above 0.1ug/ml. Please clarify and/or revise the data interpretation ********** PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No Figure resubmission: -->While revising your submission, we strongly recommend that you use PLOS’s NAAS tool (https://ngplosjournals.pagemajik.ai/artanalysis) to test your figure files. NAAS can convert your figure files to the TIFF file type and meet basic requirements (such as print size, resolution), or provide you with a report on issues that do not meet our requirements and that NAAS cannot fix.-->--> After uploading your figures to PLOS’s NAAS tool - https://ngplosjournals.pagemajik.ai/artanalysis, NAAS will process the files provided and display the results in the "Uploaded Files" section of the page as the processing is complete. If the uploaded figures meet our requirements (or NAAS is able to fix the files to meet our requirements), the figure will be marked as "fixed" above. If NAAS is unable to fix the files, a red "failed" label will appear above. When NAAS has confirmed that the figure files meet our requirements, please download the file via the download option, and include these NAAS processed figure files when submitting your revised manuscript.--> Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols-->--> |
| Revision 1 |
|
Dear Dr Bardoel, We are pleased to inform you that your manuscript 'Excessive C5 conversion prevents C9 polymerisation and subsequent MAC-dependent killing of Klebsiella pneumoniae' has been provisionally accepted for publication in PLOS Pathogens. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Pathogens. Best regards, Leigh Knodler Academic Editor PLOS Pathogens David Skurnik Section Editor PLOS Pathogens Sumita Bhaduri-McIntosh Editor-in-Chief PLOS Pathogens orcid.org/0000-0003-2946-9497 Michael Malim Editor-in-Chief PLOS Pathogens orcid.org/0000-0002-7699-2064 *********************************************************** Reviewer Comments (if any, and for reference): |
| Formally Accepted |
|
Dear Dr Bardoel, We are delighted to inform you that your manuscript, "Excessive C5 conversion prevents C9 polymerisation and subsequent MAC-dependent killing of Klebsiella pneumoniae," has been formally accepted for publication in PLOS Pathogens. We have now passed your article onto the PLOS Production Department who will complete the rest of the pre-publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Pearls, Reviews, Opinions, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript, if you opted to have an early version of your article, will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. For Research Articles, you will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Pathogens. Best regards, Sumita Bhaduri-McIntosh Editor-in-Chief PLOS Pathogens orcid.org/0000-0003-2946-9497 Michael Malim Editor-in-Chief PLOS Pathogens orcid.org/0000-0002-7699-2064 |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .