Peer Review History
| Original SubmissionJune 3, 2025 |
|---|
|
PPATHOGENS-D-25-01356 Eph Receptor Tyrosine Kinases Are Functional Entry Receptors for Murine Gammaherpesvirus 68 PLOS Pathogens Dear Dr. Großkopf, Thank you for submitting your manuscript to PLOS Pathogens. After careful consideration, we feel that it has merit but does not fully meet PLOS Pathogens's publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript within 30 days Sep 08 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plospathogens@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/ppathogens/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript: * A rebuttal letter that responds to each point raised by the editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'. This file does not need to include responses to any formatting updates and technical items listed in the 'Journal Requirements' section below. * A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'. * An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'. If you would like to make changes to your financial disclosure, competing interests statement, or data availability statement, please make these updates within the submission form at the time of resubmission. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter. We look forward to receiving your revised manuscript. Kind regards, Kenneth M Kaye Academic Editor PLOS Pathogens Robert Kalejta Section Editor PLOS Pathogens Sumita Bhaduri-McIntosh Editor-in-Chief PLOS Pathogens orcid.org/0000-0003-2946-9497 Michael Malim Editor-in-Chief PLOS Pathogens orcid.org/0000-0002-7699-2064 Additional Editor Comments: Three reviewers have reviewed your manuscript and all were very enthusiastic about the findings and presentation. However, there are a few minor issues that were raised that should be addressed. Journal Requirements: 1) Please ensure that the CRediT author contributions listed for every co-author are completed accurately and in full. At this stage, the following Authors/Authors require contributions: Anna Katharina Großkopf, Victor Tobiasson, and Laurie T. Krug. Please ensure that the full contributions of each author are acknowledged in the "Add/Edit/Remove Authors" section of our submission form. The list of CRediT author contributions may be found here: https://journals.plos.org/plospathogens/s/authorship#loc-author-contributions 2) We notice that your supplementary Figures are included in the manuscript file. Please remove them and upload them with the file type 'Supporting Information'. Please ensure that each Supporting Information file has a legend listed in the manuscript after the references list. 3) Some material included in your submission may be copyrighted. According to PLOSu2019s copyright policy, authors who use figures or other material (e.g., graphics, clipart, maps) from another author or copyright holder must demonstrate or obtain permission to publish this material under the Creative Commons Attribution 4.0 International (CC BY 4.0) License used by PLOS journals. Please closely review the details of PLOSu2019s copyright requirements here: PLOS Licenses and Copyright. If you need to request permissions from a copyright holder, you may use PLOS's Copyright Content Permission form. Please respond directly to this email and provide any known details concerning your material's license terms and permissions required for reuse, even if you have not yet obtained copyright permissions or are unsure of your material's copyright compatibility. Once you have responded and addressed all other outstanding technical requirements, you may resubmit your manuscript within Editorial Manager. Potential Copyright Issues: - Figure 5A. Please confirm whether you drew the images / clip-art within the figure panels by hand. If you did not draw the images, please provide (a) a link to the source of the images or icons and their license / terms of use; or (b) written permission from the copyright holder to publish the images or icons under our CC BY 4.0 license. Alternatively, you may replace the images with open source alternatives. See these open source resources you may use to replace images / clip-art: - https://commons.wikimedia.org 4) Please ensure that the funders and grant numbers match between the Financial Disclosure field and the Funding Information tab in your submission form. Note that the funders must be provided in the same order in both places as well. State what role the funders took in the study. If the funders had no role in your study, please state: "The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.". If you did not receive any funding for this study, please simply state: u201cThe authors received no specific funding for this work.u201d Reviewers' Comments: Reviewer's Responses to Questions Part I - Summary Please use this section to discuss strengths/weaknesses of study, novelty/significance, general execution and scholarship. Reviewer #1: Grosskopf et al report here that the Eph receptor tyrosine kinases function as receptors for murine gammaherpevirus 68. The EphR TKs were previously shown to serve as receptors for EBV, KSHV and RRV through binding the conserved gH/gL glycoproteins, findings that underpin the significance of this new report. Vaccination and immune protection from gammaherpesvirus infection and subsequent diseases is an important goal, and therefore demonstration that the mouse model system displays remarkable conservation of the critical entry interaction is very important to the field and to future studies. This report is thorough and straightforward, making use of in silico comparative studies, screening of multiple EphR family members, use of purified viral glycoprotein complexes, analysis of MHV68 infection and neutralization with purified complexes and domains, and demonstration of the sufficiency of the EphR A4 and B3 for infection of human cells. The conclusions of this report are fully supported, and indicate the utility of the conserved MHV68 infection entry system for modeling and testing gammaherpesvirus entry. Reviewer #2: Prior research has identified Eph receptors as key entry receptors engaged by the gH/gL complex of human gammaherpesviruses. This study by Grosskopf et al. is the first to demonstrate Eph receptors, specifically EphA4 and EphB3, as functional entry receptors for murine gammaherpesvirus 68 (MHV68). The manuscript presents multiple lines of evidence supporting their conclusion: interactions of MHV68 gH/gL with EphA4 and EphB3, inhibition of infection in permissive cell types by soluble EphA4 and B3, and the ability of ectopically expressed EphA4 and B3 to render otherwise non-permissive human Raji B cells susceptible to MHV68 infection. These experiments include another Eph receptor, EphA2 as a negative control for specificity. Guided by modeling and alignment with the existing structure of KSHV gH/gL-EphA2 complex, the authors experimentally demonstrated that the interaction between MHV68 gH/gL and EphA4 involves specific residues at domain I of MHV68 gH. This confirms evolutionary conservation of entry mechanisms. Overall, this study represents a significant advancement in gammaherpesvirus research and establishes a strong foundation for using MHV68 as an in vivo model system for pathogenesis and vaccine development. The manuscript is well written, clearly presented with solid experimental data, and easy to follow. Only a few clarifications are needed to further enhance the clarify of the study. Reviewer #3: Although entry receptors for EBV and KSHV, including Eph family members, have been well-described, entry receptors for the related murine virus MHV68 have not been previously determined. Work in this manuscript directly tests the ability Eph family members to interact with MHV68 glycoproteins and serve as entry receptors. Through a series of beautiful experiments, the authors identify EphA4 and EphB3 as direct interaction partners of the MHV68 gH/gL complex, and further demonstrate that expression of EphA4 and B3 facilitates infection of multiple cell types from both humans and mice. This is outstanding, well-written report with carefully controlled experiments and clear conclusions. These exciting results provide a large step forward for the field and provide important additional evidence for the evolutionary conservation of MHV68 with other human and primate herpesviruses. ********** Part II – Major Issues: Key Experiments Required for Acceptance Please use this section to detail the key new experiments or modifications of existing experiments that should be absolutely required to validate study conclusions. Generally, there should be no more than 3 such required experiments or major modifications for a "Major Revision" recommendation. If more than 3 experiments are necessary to validate the study conclusions, then you are encouraged to recommend "Reject". Reviewer #1: no major issues Reviewer #2: None Reviewer #3: NONE ********** Part III – Minor Issues: Editorial and Data Presentation Modifications Please use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. Reviewer #1: Minor issues that could be discussed: 1) In figure 2, it appears that soluble EphA2 trends toward enhancement of infection. It would be informative to learn whether this is considered to be technical or specific. 2) As shown in figure 5, antisera depletion of gH/gL specific antibodies does decrease neutralization of infection, but only to approximately 50% as the authors point out. Is this due to the capacity for herpesviruses to use multiple means of entry, incomplete depletion of gH/gL antibodies specific to epitopes not shared with the purified gH/gL reagent, other? Some discussion of this is useful in thoughtful consideration of focusing on neutralizing gH/gL in gammaherpesvirus vaccination. Reviewer #2: 1. Fig. 2. Are all cell types equally susceptible to MHV68 infection? In other words, what are the percentage of GFP+ cells in the PBS controls? This information should be included. 2. LINE 180: Typically, lower EC50 values indicates higher affinity. Therefore, the higher EC50 observed for mEphA4 is somewhat counterintuitive. The authors should clarify the interpretation of EC50 and maximum OD values in the context of receptor and gH/gL interactions. 3. Fig. 3D. Only fold change is displayed. The authors should indicate what a >20-fold increases correspond to regarding the percentage of GFP+ cells. 4. Fig. 5B. The authors should indicate whether undiluted or diluted serum was used. If diluted serum was used for ELISA, include the dilution factor. 5. Does KSHV gH/gL complex interact with murine EpHA2 and A4? Reviewer #3: MINOR 1. Fig 2C – 2G. Figures indicate percent GFP relative to control, but give no indication of total GFP+ cells (ie, percent cells infected). This should be stated clearly (or raw data included), perhaps as a supplementary figure or table. 2. MHV68 ORF59-GFP should be described in slightly more detail in the main text to indicate the nature of the GFP expression and the role of ORF59. ********** PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No Reviewer #3: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] Figure resubmission: While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. If there are other versions of figure files still present in your submission file inventory at resubmission, please replace them with the PACE-processed versions. Reproducibility: To enhance the reproducibility of your results, we recommend that authors of applicable studies deposit laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option to publish peer-reviewed clinical study protocols. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols |
| Revision 1 |
|
Dear Dr. Großkopf, We are pleased to inform you that your manuscript 'Eph Receptor Tyrosine Kinases Are Functional Entry Receptors for Murine Gammaherpesvirus 68' has been provisionally accepted for publication in PLOS Pathogens. Before your manuscript can be formally accepted you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests. Please note that your manuscript will not be scheduled for publication until you have made the required changes, so a swift response is appreciated. IMPORTANT: The editorial review process is now complete. PLOS will only permit corrections to spelling, formatting or significant scientific errors from this point onwards. Requests for major changes, or any which affect the scientific understanding of your work, will cause delays to the publication date of your manuscript. Should you, your institution's press office or the journal office choose to press release your paper, you will automatically be opted out of early publication. We ask that you notify us now if you or your institution is planning to press release the article. All press must be co-ordinated with PLOS. Thank you again for supporting Open Access publishing; we are looking forward to publishing your work in PLOS Pathogens. Best regards, Kenneth M Kaye Academic Editor PLOS Pathogens Robert Kalejta Section Editor PLOS Pathogens Sumita Bhaduri-McIntosh Editor-in-Chief PLOS Pathogens orcid.org/0000-0003-2946-9497 Michael Malim Editor-in-Chief PLOS Pathogens orcid.org/0000-0002-7699-2064 *********************************************************** Reviewer Comments (if any, and for reference): Reviewer's Responses to Questions Part I - Summary Please use this section to discuss strengths/weaknesses of study, novelty/significance, general execution and scholarship. Reviewer #1: Grosskopf et al report here that the Eph receptor tyrosine kinases function as receptors for murine gammaherpevirus 68. The EphR TKs were previously shown to serve as receptors for EBV, KSHV and RRV through binding the conserved gH/gL glycoproteins, findings that underpin the significance of this new report. Vaccination and immune protection from gammaherpesvirus infection and subsequent diseases is an important goal, and therefore demonstration that the mouse model system displays remarkable conservation of the critical entry interaction is very important to the field and to future studies. This report is thorough and straightforward, making use of in silico comparative studies, screening of multiple EphR family members, use of purified viral glycoprotein complexes, analysis of MHV68 infection and neutralization with purified complexes and domains, and demonstration of the sufficiency of the EphR A4 and B3 for infection of human cells. The conclusions of this report are fully supported, and indicate the utility of the conserved MHV68 infection entry system for modeling and testing gammaherpesvirus entry. Reviewer #2: The authors have thoughtfully addressed the comments raised by the reviewers. I have no further concerns. Overall, this is a well-executed study. Reviewer #3: Reviewers have appropriately addressed all concerns. ********** Part II – Major Issues: Key Experiments Required for Acceptance Please use this section to detail the key new experiments or modifications of existing experiments that should be absolutely required to validate study conclusions. Generally, there should be no more than 3 such required experiments or major modifications for a "Major Revision" recommendation. If more than 3 experiments are necessary to validate the study conclusions, then you are encouraged to recommend "Reject". Reviewer #1: none Reviewer #2: (No Response) Reviewer #3: (No Response) ********** Part III – Minor Issues: Editorial and Data Presentation Modifications Please use this section for editorial suggestions as well as relatively minor modifications of existing data that would enhance clarity. Reviewer #1: Inclusion of the raw counts for %GFP+ cells is appreciated. While looking closely at the raw data makes it clear why the authors chose to display as fold-increase vs PBS, and those insights are supported by the raw data, it may be more transparent to actually name the variability in the raw data. The raw data baselines are highly variable, and for readers who would replicate findings, it would be helpful to make it clear that the %GFP cells across experiments has wide variability. This does not diminish the results, but would enhance transparency. Reviewer #2: (No Response) Reviewer #3: (No Response) ********** PLOS authors have the option to publish the peer review history of their article (what does this mean? ). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy . Reviewer #1: No Reviewer #2: No Reviewer #3: No |
| Formally Accepted |
|
Dear Dr. Großkopf, We are delighted to inform you that your manuscript, "Eph Receptor Tyrosine Kinases Are Functional Entry Receptors for Murine Gammaherpesvirus 68," has been formally accepted for publication in PLOS Pathogens. We have now passed your article onto the PLOS Production Department who will complete the rest of the pre-publication process. All authors will receive a confirmation email upon publication. The corresponding author will soon be receiving a typeset proof for review, to ensure errors have not been introduced during production. Please review the PDF proof of your manuscript carefully, as this is the last chance to correct any scientific or type-setting errors. Please note that major changes, or those which affect the scientific understanding of the work, will likely cause delays to the publication date of your manuscript. Note: Proofs for Front Matter articles (Pearls, Reviews, Opinions, etc...) are generated on a different schedule and may not be made available as quickly. Soon after your final files are uploaded, the early version of your manuscript, if you opted to have an early version of your article, will be published online. The date of the early version will be your article's publication date. The final article will be published to the same URL, and all versions of the paper will be accessible to readers. For Research Articles, you will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing. Thank you again for supporting open-access publishing; we are looking forward to publishing your work in PLOS Pathogens. Best regards, Sumita Bhaduri-McIntosh Editor-in-Chief PLOS Pathogens orcid.org/0000-0003-2946-9497 Michael Malim Editor-in-Chief PLOS Pathogens orcid.org/0000-0002-7699-2064 |
Open letter on the publication of peer review reports
PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.
We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.
Learn more at ASAPbio .