Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica
Figure 5
Different architecture of P. indica LysM and WSC containing proteins.
Protein domains in the genome of P. indica were identified using the PfamScan perl-script (ftp://ftp.sanger.ac.uk/pub/databases/Pfam/Tools/PfamScan.tar.gz; [38]). Results were validated with SMART [101]. Domains were grouped based on their structure and visualized using DOG (version 1.0; [102]). Frequency of each domain is specified by the numbers below the brackets. A) Lectin-like LysM: 11 ORFs; LysM + polysaccharide deacetylase: 3 ORFs; LysM + peptidase M36 (fungalysin metallopeptidase): 2 ORFs; LysM + WSC: 1 ORF; LysM + glycoside hydrolase 88 (d-4,5 unsaturated β- glucuronyl hydrolase): 1 ORF; LysM + transmembrane domain (TM): 1 ORF. B) Lectin-like WSC: 28 ORFs; WSC + glyoxal oxidase: 3 ORFs; WSC + DUF 1996: 3 ORFs; WSC + LysM: 1 ORF; WSC + glycoside hydrolase 71 (α-1,3-glucanase): 1 ORF. C) Lectin-like CBM1: 14 ORFs; CBM1 + glycoside hydrolases: 32 ORFs; CBM1 + other catalytic enzymes: 15 ORFs.