Evolutionary and Transmission Dynamics of Reassortant H5N1 Influenza Virus in Indonesia
Figure 2
Recombination analyses on concatenated influenza virus genomes.
(A) Schematic diagram of concatenated influenza virus genomes. (B) Similarity plot. (C) Bootscan analysis. (D) GARD analysis. (E) Individual phylogenies reconstructed from non-recombinant fragments identified by GARD. Consensus sequences representing viral groups, window size of 600 bp and step size of 10 bp, were used for the similarity plot and bootscan analysis. The distance bar for the trees in (D) is 0.004 substitutions/site. Taxa of putative reassortant viruses are in red.