Dynamics of the microbiota in patients with Clostridioides difficile: Recurrence, treatment, sex, and immunosuppression

• Maria Paz Ventero ,

  Contributed equally to this work with: Maria Paz Ventero, Rocio Herrero

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Writing – original draft, Writing – review & editing

  ¶‡ MPV and RH share first authorship on this work. NM and EMDL are joint senior authors on this work.

  Affiliation Microbiology Service, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain

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• Rocio Herrero ,

  Contributed equally to this work with: Maria Paz Ventero, Rocio Herrero

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Writing – original draft, Writing – review & editing

  ¶‡ MPV and RH share first authorship on this work. NM and EMDL are joint senior authors on this work.

  Affiliation Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain

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• Iryna Tyshkovska,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain

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• Maria-Dolores Valverde-Fredet,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Resources, Writing – review & editing

  Affiliation Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain

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• Juan Carlos Rodríguez ,

  Roles Conceptualization, Investigation, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: rodriguez_juadia@gva.es

  Affiliations Microbiology Service, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain, Clinical Medicine Department, Miguel Hernández University, Elche, Spain

  https://orcid.org/0000-0001-8007-5739

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• Miguel Rodríguez-Fernández,

  Roles Data curation, Methodology, Resources, Writing – review & editing

  Affiliation Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain

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• Pilar González-De-La-Aleja,

  Roles Data curation, Methodology, Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain

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• Marta Trigo,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain

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• Monica Parra,

  Roles Methodology, Resources, Writing – review & editing

  Affiliation Microbiology Service, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain

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• Ana-Isabel Aller,

  Roles Resources, Writing – review & editing

  Affiliation Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain

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• Silvia Otero,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain

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• Reinaldo Espindola-Gomez,

  Roles Resources, Writing – review & editing

  Affiliation Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain

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• José Manuel Ramos,

  Roles Funding acquisition, Resources, Writing – review & editing

  Affiliations Clinical Medicine Department, Miguel Hernández University, Elche, Spain, Unit of Infectious Diseases, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain

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• Eva M. León,

  Roles Resources, Writing – review & editing

  Affiliation Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain

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• Maria García,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Vega Baja University Hospital - Orihuela, Spain-FISABIO, Foundation for the Promotion of Health and Biomedical Research of the Valencian Community, Valencia, Spain

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• Miguel Nicolas Navarrete-Lorite,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Virgen Macarena University Hospital, Sevilla, Spain

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• Jara Llenas-García,

  Roles Resources, Writing – review & editing

  Affiliations Clinical Medicine Department, Miguel Hernández University, Elche, Spain, Unit of Infectious Diseases, Vega Baja University Hospital - Orihuela, Spain-FISABIO, Foundation for the Promotion of Health and Biomedical Research of the Valencian Community, Valencia, Spain, CIBERINFEC, Carlos III Health Institute, Madrid, Spain

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• Ines Portillo,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Virgen Macarena University Hospital, Sevilla, Spain

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• Francisco Jover,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Sant Joan D’Alacant University Hospital, Sant Joan D’Alacant, Spain

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• Maria Tasias,

  Roles Resources, Writing – review & editing

  Affiliation Infectious Diseases Service, La Fe University and Polytechnic Hospital, Valencia, Spain

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• Juan Jose Caston,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Reina Sofía University Hospital, Córdoba, Spain

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• Concepción Gil,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Marina Baixa Hospital, VillaJoiosa, Spain

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• David Vinuesa-Garcia,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, San Cecilio University Hospital, Granada, Spain

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• Cristina Gomez-Ayerbe,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Virgen de la Victoria University Hospital - Valencia, Malaga, Spain

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• Francisco J. Martínez Marcos,

  Roles Resources, Writing – review & editing

  Affiliation Unit of Infectious Diseases, Juan Ramón Jimenez University Hospital, Huelva, Spain

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• Nicolas Merchante ,

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Project administration, Resources, Software, Supervision, Validation, Writing – original draft, Writing – review & editing

  ¶‡ MPV and RH share first authorship on this work. NM and EMDL are joint senior authors on this work.

  Affiliation Clinical Medicine Department, Miguel Hernández University, Elche, Spain

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•  [ ... ],
• Esperanza Merino De Lucas

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Project administration, Resources, Software, Supervision, Validation, Writing – original draft, Writing – review & editing

  ¶‡ MPV and RH share first authorship on this work. NM and EMDL are joint senior authors on this work.

  Affiliations Clinical Unit of Infectious Diseases and Microbiology, Valme University Hospital, Institute of Biomedicine of Seville (IBiS), University of Seville, Sevilla, Spain, Unit of Infectious Diseases, Alicante General University Hospital - Alicante Institute of Health and Biomedical Research (ISABIAL), Alicante, Spain

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