High-resolution genome assembly and linkage mapping in Meloidogyne hapla reveal non-canonical telomere repeats and recombination hotspots associated with effector proteins

• Pallavi Shakya,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Plant Pathology, University of California, Davis, California, United States of America

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• Muhammad I. Maulana,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliations Laboratory of Nematology, Droevendaalsesteeg PB, Wageningen University and Research, Wageningen, The Netherlands, Department of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada, Yogyakarta, Indonesia

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• Etienne G. J. Danchin,

  Roles Conceptualization, Formal analysis, Methodology, Writing – review & editing

  Affiliation INRAE, Université Côte d’Azur, CNRS, Sophia-Antipolis, France

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• M. Laurens Voogt,

  Roles Formal analysis, Writing – review & editing

  Affiliation Laboratory of Nematology, Droevendaalsesteeg PB, Wageningen University and Research, Wageningen, The Netherlands

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• Stefan J. S. van de Ruitenbeek,

  Roles Formal analysis, Validation, Writing – review & editing

  Affiliation Laboratory of Nematology, Droevendaalsesteeg PB, Wageningen University and Research, Wageningen, The Netherlands

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• Jacinta Gimeno,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Department of Plant Pathology, University of California, Davis, California, United States of America

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• Adam P. Taranto,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliations Department of Plant Pathology, University of California, Davis, California, United States of America, School of BioSciences, The University of Melbourne, Melbourne, Victoria, Australia

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• Alison C. Blundell,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Department of Plant Pathology, University of California, Davis, California, United States of America

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• Evelin Despot-Slade,

  Roles Conceptualization, Investigation, Methodology, Visualization, Writing – review & editing

  Affiliation Ruđer Bošković Institute, Zagreb, Croatia

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• Nevenka Meštrović,

  Roles Conceptualization, Investigation, Visualization, Writing – review & editing

  Affiliation Ruđer Bošković Institute, Zagreb, Croatia

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• Ana Zotta Mota,

  Roles Formal analysis, Methodology, Writing – review & editing

  Affiliation INRAE, Université Côte d’Azur, CNRS, Sophia-Antipolis, France

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• Dadong Dai,

  Roles Methodology, Writing – review & editing

  Affiliation Department of Entomology and Nematology, University of California, Davis, California, United States of America

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• Valerie M. Williamson,

  Roles Conceptualization, Methodology, Resources, Supervision, Writing – review & editing

  Affiliation Department of Plant Pathology, University of California, Davis, California, United States of America

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• Mark G. Sterken ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Methodology, Project administration, Writing – original draft, Writing – review & editing

  * E-mail: mark.sterken@wur.nl (MGS); ssiddique@ucdavis.edu (SS)

  Affiliation Laboratory of Nematology, Droevendaalsesteeg PB, Wageningen University and Research, Wageningen, The Netherlands

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• Shahid Siddique

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: mark.sterken@wur.nl (MGS); ssiddique@ucdavis.edu (SS)

  Affiliation Department of Entomology and Nematology, University of California, Davis, California, United States of America

  https://orcid.org/0000-0001-7503-4318

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