Non-canonical Metatranscriptomic analysis of COVID-19 and Dengue reveals an expanded microbial and AMR landscape in COVID-19 mortality patients

• Aanchal Yadav ,

  Contributed equally to this work with: Aanchal Yadav, Raiyan Ali

  Roles Formal analysis, Investigation, Methodology, Visualization, Writing – original draft

  Affiliations Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India

  ⨯
• Raiyan Ali ,

  Contributed equally to this work with: Aanchal Yadav, Raiyan Ali

  Roles Data curation, Formal analysis, Investigation, Visualization, Writing – original draft

  Affiliation Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India

  ⨯
• Priti Devi,

  Roles Formal analysis, Investigation, Methodology, Visualization, Writing – original draft

  Affiliations Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India

  ⨯
• Pallawi Kumari,

  Roles Data curation, Formal analysis, Investigation, Visualization, Writing – original draft

  Affiliations Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India, Indraprastha Institute of Information Technology (IIIT), New Delhi, India

  ⨯
• Jyoti Soni,

  Roles Investigation, Writing – original draft

  Affiliations Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India

  ⨯
• Garima,

  Roles Investigation, Writing – original draft

  Affiliations Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India

  ⨯
• Bansidhar Tarai,

  Roles Resources

  Affiliation Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi, India

  ⨯
• Sandeep Budhiraja,

  Roles Resources

  Affiliation Max Super Speciality Hospital (A Unit of Devki Devi Foundation), Max Healthcare, Delhi, India

  ⨯
• Uzma Shamim ,

  Roles Investigation, Methodology, Writing – review & editing

  * E-mail: rajeshp@igib.in, rajeshp.igib@csir.res.in (RP); uzma.shamim@igib.in (US)

  Affiliations Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India, Ashoka University, Sonipat, Haryana, India

  ⨯
• Rajesh Pandey

  Roles Conceptualization, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: rajeshp@igib.in, rajeshp.igib@csir.res.in (RP); uzma.shamim@igib.in (US)

  ¶‡ Lead contact.

  Affiliations Division of Immunology and Infectious Disease Biology, INtegrative GENomics of HOst-PathogEn (INGEN-HOPE) Laboratory, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India, Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India

  https://orcid.org/0000-0002-4404-8327

  ⨯