Ecological ubiquity and phylogeny drive nestedness in phages–bacteria networks and shape the bacterial defensome

• Chloé Feltin ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Writing – original draft, Writing – review & editing

  * E-mail: clara.torresbarcelo@inrae.fr (CTB); chloe.feltin@inrae.fr (CF)

  Affiliation Pathologie Végétale, INRAE, Montfavet, France

  https://orcid.org/0009-0008-8300-1311

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• Sylvain Piry,

  Roles Data curation, Formal analysis, Investigation, Writing – review & editing

  Affiliation Pathologie Végétale, INRAE, Montfavet, France

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• Benoit Moury,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation Pathologie Végétale, INRAE, Montfavet, France

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• Lola Chateau,

  Roles Data curation, Formal analysis, Investigation, Methodology

  Affiliation Pathologie Végétale, INRAE, Montfavet, France

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• Karine Berthier,

  Roles Formal analysis, Investigation

  Affiliation Pathologie Végétale, INRAE, Montfavet, France

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• Jonathan M. Jacobs,

  Roles Formal analysis, Writing – review & editing

  Affiliations Department of Plant Pathology, The Ohio State University, Columbus, United States of America, Infectious Disease Institute, The Ohio State University, Columbus, United States of America

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• Jules Butchacas,

  Roles Formal analysis, Investigation

  Affiliations Department of Plant Pathology, The Ohio State University, Columbus, United States of America, Infectious Disease Institute, The Ohio State University, Columbus, United States of America

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• Linda Fenske,

  Roles Formal analysis, Investigation

  Affiliation Bioinformatics and Systems Biology, Justus-Liebig-Universitat Giessen, Giessen, Germany

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• Lillian Ebeling-Koning,

  Roles Formal analysis, Investigation

  Affiliations Department of Plant Pathology, The Ohio State University, Columbus, United States of America, Infectious Disease Institute, The Ohio State University, Columbus, United States of America

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• Theo H. M. Smits,

  Roles Data curation, Formal analysis, Investigation, Writing – review & editing

  Affiliation Environmental Genomics and Systems Biology Research Group, Institute of Natural Resource Sciences (IUNR), Zurich University of Applied Sciences: ZHAW Zurcher Hochschule fur Angewandte Wissenschaften, Wädenswil, Switzerland

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• Cindy E. Morris,

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Writing – review & editing

  Affiliation Pathologie Végétale, INRAE, Montfavet, France

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• Clara Torres-Barceló

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: clara.torresbarcelo@inrae.fr (CTB); chloe.feltin@inrae.fr (CF)

  Affiliation PHIM Plant Health Institute, INRAE, University of Montpellier, CIRAD, Institut Agro, IRD, Montpellier, France

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