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Open Access
Peer-reviewed
Research Article
Discovery of functional factorless internal ribosome entry site-like structures through virome mining
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Subash Chapagain ,
Contributed equally to this work with: Subash Chapagain, Nicolas Salcedo-Porras, Amir Abdolahzadeh
Roles Formal analysis, Investigation, Methodology, Validation, Writing – review & editing
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Nicolas Salcedo-Porras ,
Contributed equally to this work with: Subash Chapagain, Nicolas Salcedo-Porras, Amir Abdolahzadeh
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Amir Abdolahzadeh ,
Contributed equally to this work with: Subash Chapagain, Nicolas Salcedo-Porras, Amir Abdolahzadeh
Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Validation, Visualization, Writing – review & editing
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Yaohua Zhang,
Roles Formal analysis, Investigation, Methodology, Validation, Visualization
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Higor Sette Pereira,
Roles Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – review & editing
Affiliation Department of Biological Sciences, University of Lethbridge, Alberta, Canada
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Stephane Flibotte,
Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada, Bioinformatics Core Facility, University of British Columbia, Vancouver, British Columbia, Canada
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Kevin Low,
Roles Formal analysis, Investigation, Methodology, Validation, Visualization
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Christina Young,
Roles Formal analysis, Investigation, Methodology, Validation, Writing – review & editing
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Yuhang Wu,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Shao Wang,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada
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Soh Ishiguro,
Roles Formal analysis, Investigation, Methodology, Validation
Affiliation School of Biomedical Engineering, University of British Columbia, Vancouver, British Columbia, Canada
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Nozomu Yachie,
Roles Conceptualization, Investigation, Project administration, Resources, Supervision, Writing – review & editing
Affiliations School of Biomedical Engineering, University of British Columbia, Vancouver, British Columbia, Canada, Premium Research Institute for Human Metaverse Medicine (WPI-PRIMe), Osaka University, Suita, Osaka, Japan, Research Center for Advanced Science and Technology, The University of Tokyo, Tokyo, Japan
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Trushar Patel,
Roles Funding acquisition, Investigation, Project administration, Resources, Supervision
Affiliation Department of Biological Sciences, University of Lethbridge, Alberta, Canada
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Artem Babaian,
Roles Data curation, Project administration, Resources, Software, Supervision
Affiliation Department of Molecular Genetics, Donnelly Center for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario, Canada
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Eric Jan
Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: ej@mail.ubc.ca
Affiliations Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, British Columbia, Canada, Department of Biological Sciences, University of Lethbridge, Alberta, Canada
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Discovery of functional factorless internal ribosome entry site-like structures through virome mining
- Subash Chapagain,
- Nicolas Salcedo-Porras,
- Amir Abdolahzadeh,
- Yaohua Zhang,
- Higor Sette Pereira,
- Stephane Flibotte,
- Kevin Low,
- Christina Young,
- Yuhang Wu,
- Shao Wang
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- Published: June 26, 2025
- https://doi.org/10.1371/journal.ppat.1013255