In depth sequencing of a serially sampled household cohort reveals the within-host dynamics of Omicron SARS-CoV-2 and rare selection of novel spike variants

• Emily E. Bendall,

  Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Writing – original draft, Writing – review & editing

  Affiliation Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, United States of America

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• Derek Dimcheff,

  Roles Data curation, Investigation, Methodology, Writing – review & editing

  Affiliation Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, United States of America

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• Leigh Papalambros,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, United States of America

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• William J. Fitzsimmons,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, United States of America

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• Yuwei Zhu,

  Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Biostatistics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Jonathan Schmitz,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Pathology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Natasha Halasa,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Pediatrics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• James Chappell,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Pediatrics, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Emily T. Martin,

  Roles Data curation, Funding acquisition, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Epidemiology, University of Michigan, Ann Arbor, Michigan, United States of America

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• Jessica E. Biddle,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Centers for Disease Control and Prevention, Atlanta, GeorgiaUnited States of America

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• Sarah E. Smith-Jeffcoat,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Centers for Disease Control and Prevention, Atlanta, GeorgiaUnited States of America

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• Melissa A. Rolfes,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Centers for Disease Control and Prevention, Atlanta, GeorgiaUnited States of America

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• Alexandra Mellis,

  Roles Data curation, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Centers for Disease Control and Prevention, Atlanta, GeorgiaUnited States of America

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• H. Keipp Talbot,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Writing – review & editing

  Affiliations Department of Health Policy, Vanderbilt University Medical Center, Nashville, Tennessee Tennessee, United States of America, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Carlos Grijalva,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Writing – review & editing

  Affiliation Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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•  [ ... ],
• Adam S. Lauring

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Writing – original draft, Writing – review & editing

  * E-mail: alauring@med.umich.edu

  Affiliations Department of Microbiology & Immunology, University of Michigan, Ann Arbor, Michigan, United States of America, Department of Internal Medicine, University of Michigan, Ann Arbor, Michigan, United States of America

  https://orcid.org/0000-0003-2906-8335

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