Variable rates of SARS-CoV-2 evolution in chronic infections

• Ewan W. Smith,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, United Kingdom

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• William L. Hamilton,

  Roles Data curation, Resources, Writing – original draft, Writing – review & editing

  Affiliations Department of Medicine, University of Cambridge, Cambridge, United Kingdom, Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom, Wellcome Sanger Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom

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• Ben Warne,

  Roles Data curation, Resources, Writing – review & editing

  Affiliations Department of Medicine, University of Cambridge, Cambridge, United Kingdom, Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom

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• Elena R. Walker,

  Roles Formal analysis, Investigation, Writing – review & editing

  Affiliation MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, United Kingdom

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• Aminu S. Jahun,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Division of Virology, Department of Virology, University of Cambridge, Cambridge, United Kingdom

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• Myra Hosmillo,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation Division of Virology, Department of Virology, University of Cambridge, Cambridge, United Kingdom

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• ISARIC Consortium ,

  ¶Membership of the ISARIC Consortium is provided in Supporting Information file S1 Text.

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• Ravindra K. Gupta,

  Roles Resources, Writing – review & editing

  Affiliations Department of Medicine, University of Cambridge, Cambridge, United Kingdom, Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), University of Cambridge, Cambridge, United Kingdom

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• Ian Goodfellow,

  Roles Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Division of Virology, Department of Virology, University of Cambridge, Cambridge, United Kingdom

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• Effrossyni Gkrania-Klotsas,

  Roles Data curation, Project administration, Resources, Writing – review & editing

  Affiliations Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom, MRC Epidemiology Unit, University of Cambridge, Level 3 Institute of Metabolic Science, Cambridge, United Kingdom, School of Clinical Medicine, University of Cambridge, Cambridge, United Kingdom

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• M. Estée Török,

  Roles Funding acquisition, Project administration, Resources, Writing – review & editing

  Affiliations Department of Medicine, University of Cambridge, Cambridge, United Kingdom, Cambridge University Hospitals NHS Foundation Trust, Cambridge, United Kingdom

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• Christopher J. R. Illingworth

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: christopher.illingworth@glasgow.ac.uk

  Affiliation MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, United Kingdom

  https://orcid.org/0000-0002-0030-2784

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