Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data

• Michael A. Martin,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Pathology, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America

  https://orcid.org/0000-0002-9689-4066

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• Andrea Brizzi,

  Roles Data curation, Formal analysis, Methodology, Writing – review & editing

  Affiliation Department of Mathematics, Imperial College London, London, United Kingdom

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• Xiaoyue Xi,

  Roles Data curation, Formal analysis, Methodology, Writing – review & editing

  Affiliations Department of Mathematics, Imperial College London, London, United Kingdom, Medical Research Council Biostatistics Unit, University of Cambridge, Cambridge, United Kingdom

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• Ronald Moses Galiwango,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Rakai Health Sciences Program, Kalisizo, Uganda

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• Sikhulile Moyo,

  Roles Data curation, Funding acquisition, Project administration, Writing – review & editing

  Affiliations Botswana Harvard AIDS Institute Partnership, Botswana Harvard HIV Reference Laboratory, Gaborone, Botswana, Harvard T.H. Chan School of Public Health, Boston, Massachusetts, United States of America

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• Deogratius Ssemwanga,

  Roles Investigation, Writing – review & editing

  Affiliations Medical Research Council/Uganda Virus Research Institute and London School of Hygiene and Tropical Medicine Uganda Research Unit, Entebbe, Uganda, Uganda Virus Research Institute, Entebbe, Uganda

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• Alexandra Blenkinsop,

  Roles Conceptualization, Formal analysis, Methodology, Writing – review & editing

  Affiliation Department of Mathematics, Imperial College London, London, United Kingdom

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• Andrew D. Redd,

  Roles Funding acquisition, Investigation, Writing – review & editing

  Affiliations Department of Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa

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• Lucie Abeler-Dörner,

  Roles Funding acquisition, Project administration, Writing – review & editing

  Affiliation Pandemic Sciences Institute, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• Christophe Fraser,

  Roles Conceptualization, Funding acquisition, Project administration, Supervision, Writing – review & editing

  Affiliation Pandemic Sciences Institute, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• Steven J. Reynolds,

  Roles Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing

  Affiliations Rakai Health Sciences Program, Kalisizo, Uganda, Department of Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

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• Thomas C. Quinn,

  Roles Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Rakai Health Sciences Program, Kalisizo, Uganda, Department of Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America

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• Joseph Kagaayi,

  Roles Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Rakai Health Sciences Program, Kalisizo, Uganda, Makerere University School of Public Health, Kampala, Uganda

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• David Bonsall,

  Roles Data curation, Funding acquisition, Investigation, Methodology, Project administration, Resources, Writing – review & editing

  Affiliation Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• David Serwadda,

  Roles Funding acquisition, Project administration, Writing – review & editing

  Affiliation Rakai Health Sciences Program, Kalisizo, Uganda

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• Gertrude Nakigozi,

  Roles Data curation, Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing

  Affiliation Rakai Health Sciences Program, Kalisizo, Uganda

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• Godfrey Kigozi,

  Roles Data curation, Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing

  Affiliation Rakai Health Sciences Program, Kalisizo, Uganda

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• M. Kate Grabowski ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Project administration, Resources, Supervision, Validation, Writing – original draft, Writing – review & editing

  * E-mail: mmart108@jhmi.edu (MAM); mgrabow2@jhu.edu (MKG); oliver.ratmann@imperial.ac.uk (OR)

  Affiliations Department of Pathology, Johns Hopkins School of Medicine, Baltimore, Maryland, United States of America, Rakai Health Sciences Program, Kalisizo, Uganda, Department of Epidemiology, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America

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• Oliver Ratmann ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Writing – original draft, Writing – review & editing

  * E-mail: mmart108@jhmi.edu (MAM); mgrabow2@jhu.edu (MKG); oliver.ratmann@imperial.ac.uk (OR)

  Affiliation Department of Mathematics, Imperial College London, London, United Kingdom

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•  [ ... ],
• with the PANGEA-HIV Consortium and the Rakai Health Sciences Program
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