Using viral sequence diversity to estimate time of HIV infection in infants

• Magdalena L. Russell,

  Roles Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Computational Biology Program, Fred Hutch Cancer Center, Seattle, Washington, United States of America, Molecular and Cellular Biology Program, University of Washington, Seattle, Washington, United States of America

  https://orcid.org/0000-0002-1068-1968

  ⨯
• Carolyn S. Fish,

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – review & editing

  Affiliation Division of Human Biology, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America

  ⨯
• Sara Drescher,

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – review & editing

  Affiliations University of Washington Medical Center, Seattle, Washington, United States of America, Howard Hughes Medical Institute, Seattle, Washington, United States of America

  ⨯
• Noah A. J. Cassidy,

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Writing – review & editing

  Affiliation Division of Human Biology, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America

  ⨯
• Pritha Chanana,

  Roles Data curation, Formal analysis, Methodology, Validation

  Affiliation Bioinformatics Shared Resource, Fred Hutch Cancer Center, Seattle, Washington, United States of America

  ⨯
• Sarah Benki-Nugent,

  Roles Project administration, Writing – review & editing

  Affiliation Department of Global Health, University of Washington, Seattle, Washington, United States of America

  ⨯
• Jennifer Slyker,

  Roles Data curation, Project administration, Resources, Writing – review & editing

  Affiliations Department of Global Health, University of Washington, Seattle, Washington, United States of America, Department of Epidemiology, University of Washington, Seattle, Washington, United States of America

  ⨯
• Dorothy Mbori-Ngacha,

  Roles Project administration, Resources, Supervision

  Affiliation Department of Pediatrics and Child Health, University of Nairobi, Nairobi, Kenya

  ⨯
• Rose Bosire,

  Roles Project administration, Resources, Supervision

  Affiliation Centre for Clinical Research, Kenya Medical Research Institute, Nairobi, Kenya

  ⨯
• Barbra Richardson,

  Roles Data curation, Formal analysis, Validation, Writing – review & editing

  Affiliations Department of Global Health, University of Washington, Seattle, Washington, United States of America, Department of Biostatistics, University of Washington, Seattle, Washington, United States of America, Vaccine and Infectious Disease Division, Fred Hutch Cancer Center, Seattle, Washington, United States of America

  ⨯
• Dalton Wamalwa,

  Roles Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Department of Global Health, University of Washington, Seattle, Washington, United States of America, Department of Pediatrics and Child Health, University of Nairobi, Nairobi, Kenya

  ⨯
• Elizabeth Maleche-Obimbo,

  Roles Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Department of Pediatrics and Child Health, University of Nairobi, Nairobi, Kenya

  ⨯
• Julie Overbaugh,

  Roles Conceptualization, Funding acquisition, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Division of Human Biology, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America

  ⨯
• Grace John-Stewart,

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  Affiliations Department of Global Health, University of Washington, Seattle, Washington, United States of America, Department of Epidemiology, University of Washington, Seattle, Washington, United States of America, Department of Pediatrics, University of Washington, Seattle, Washington, United States of America, Department of Medicine, University of Washington, Seattle, Washington, United States of America

  ⨯
• Frederick A. Matsen IV ,

  Roles Funding acquisition, Methodology, Supervision, Writing – review & editing

  * E-mail: matsen@fredhutch.org (FAM); dlehman@fredhutch.org (DAL)

  ¶‡ These authors are co-senior authors on this work.

  Affiliations Computational Biology Program, Fred Hutch Cancer Center, Seattle, Washington, United States of America, Howard Hughes Medical Institute, Seattle, Washington, United States of America, Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America, Department of Statistics, University of Washington, Seattle, Washington, United States of America

  https://orcid.org/0000-0003-0607-6025

  ⨯
•  [ ... ],
• Dara A. Lehman

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: matsen@fredhutch.org (FAM); dlehman@fredhutch.org (DAL)

  ¶‡ These authors are co-senior authors on this work.

  Affiliations Division of Human Biology, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Global Health, University of Washington, Seattle, Washington, United States of America

  https://orcid.org/0000-0002-0372-0631

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