Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron

• Simon Dellicour ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: simon.dellicour@ulb.be (SD); ralf.duerr@nyulangone.org (RD); adriana.heguy@nyulangone.org (AH)

  Affiliations Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Bruxelles, Belgium, Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven, Leuven, Belgium

  https://orcid.org/0000-0001-9558-1052

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• Samuel L. Hong,

  Roles Formal analysis, Investigation, Validation, Writing – review & editing

  Affiliation Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven, Leuven, Belgium

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• Verity Hill,

  Roles Formal analysis, Software, Writing – review & editing

  Affiliation Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America

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• Dacia Dimartino,

  Roles Formal analysis, Resources, Writing – review & editing

  Affiliation Genome Technology Center, Office for Science and Research, NYU Langone Health, New York, New York, United States of America

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• Christian Marier,

  Roles Data curation, Formal analysis, Resources, Writing – review & editing

  Affiliation Genome Technology Center, Office for Science and Research, NYU Langone Health, New York, New York, United States of America

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• Paul Zappile,

  Roles Formal analysis, Resources, Writing – review & editing

  Affiliation Genome Technology Center, Office for Science and Research, NYU Langone Health, New York, New York, United States of America

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• Gordon W. Harkins,

  Roles Resources, Writing – review & editing

  Affiliation South African National Bioinformatics Institute, University of the Western Cape, Bellville, South Africa

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• Philippe Lemey,

  Roles Conceptualization, Resources, Software, Validation, Writing – review & editing

  Affiliation Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven, Leuven, Belgium

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• Guy Baele,

  Roles Conceptualization, Investigation, Resources, Software, Writing – review & editing

  Affiliation Department of Microbiology, Immunology and Transplantation, Rega Institute, Laboratory for Clinical and Epidemiological Virology, KU Leuven, Leuven, Belgium

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• Ralf Duerr ,

  Roles Conceptualization, Investigation, Project administration, Validation, Writing – review & editing

  * E-mail: simon.dellicour@ulb.be (SD); ralf.duerr@nyulangone.org (RD); adriana.heguy@nyulangone.org (AH)

  Affiliations Department of Microbiology, NYU Grossman School of Medicine, New York, New York, United States of America, Department of Medicine, NYU Grossman School of Medicine, New York, New York, United States of America, Vaccine Center, NYU Grossman School of Medicine, New York, New York, United States of America

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• Adriana Heguy

  Roles Funding acquisition, Project administration, Resources, Validation, Writing – review & editing

  * E-mail: simon.dellicour@ulb.be (SD); ralf.duerr@nyulangone.org (RD); adriana.heguy@nyulangone.org (AH)

  Affiliations Genome Technology Center, Office for Science and Research, NYU Langone Health, New York, New York, United States of America, Department of Pathology, NYU Grossman School of Medicine, New York, New York, United States of America

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