A cohort-based study of host gene expression: tumor suppressor and innate immune/inflammatory pathways associated with the HIV reservoir size

• Ashok K. Dwivedi ,

  Roles Conceptualization, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

  ¶‡ AKD & GGG share first authorship on this work. SGD & SAL share last authorship on this work.

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

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• Germán G. Gornalusse ,

  Roles Data curation, Formal analysis, Funding acquisition, Visualization, Writing – review & editing

  ¶‡ AKD & GGG share first authorship on this work. SGD & SAL share last authorship on this work.

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Obstetrics and Gynecology, University of Washington, Seattle, Washington, United States of America

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• David A. Siegel,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Supervision

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

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• Alton Barbehenn,

  Roles Formal analysis, Visualization

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

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• Cassandra Thanh,

  Roles Data curation, Formal analysis

  Affiliation Department of Medicine, Division of Experimental Medicine, University of California San Francisco, California, United States of America

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• Rebecca Hoh,

  Roles Data curation, Project administration, Resources

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

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• Kristen S. Hobbs,

  Roles Data curation, Formal analysis

  Affiliation Department of Medicine, Division of Experimental Medicine, University of California San Francisco, California, United States of America

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• Tony Pan,

  Roles Data curation

  Affiliation Department of Medicine, Division of Experimental Medicine, University of California San Francisco, California, United States of America

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• Erica A. Gibson,

  Roles Data curation

  Affiliation Department of Medicine, Division of Experimental Medicine, University of California San Francisco, California, United States of America

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• Jeffrey Martin,

  Roles Resources

  Affiliation Department of Biostatistics & Epidemiology, University of California San Francisco, California, United States of America

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• Frederick Hecht,

  Roles Resources

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

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• Christopher Pilcher,

  Roles Resources

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

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• Jeffrey Milush,

  Roles Data curation, Formal analysis

  Affiliation Department of Medicine, Division of Experimental Medicine, University of California San Francisco, California, United States of America

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• Michael P. Busch,

  Roles Funding acquisition, Resources

  Affiliation Vitalant Blood Bank, San Francisco, California, United States of America

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• Mars Stone,

  Roles Resources

  Affiliation Vitalant Blood Bank, San Francisco, California, United States of America

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• Meei-Li Huang,

  Roles Data curation, Formal analysis

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America

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• Julieta Reppetti,

  Roles Data curation, Validation

  Affiliations Department of Obstetrics and Gynecology, University of Washington, Seattle, Washington, United States of America, Universidad de Buenos Aires (UBA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Instituto de Fisiología y Biofísica Bernardo Houssay (IFIBIO- Houssay), Buenos Aires, Argentina

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• Phuong M. Vo,

  Roles Data curation, Formal analysis, Validation

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Obstetrics and Gynecology, University of Washington, Seattle, Washington, United States of America

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• Claire N. Levy,

  Roles Data curation, Formal analysis

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Obstetrics and Gynecology, University of Washington, Seattle, Washington, United States of America

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• Pavitra Roychoudhury,

  Roles Data curation, Formal analysis, Supervision

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America

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• Keith R. Jerome,

  Roles Data curation, Resources, Supervision

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America

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• Florian Hladik,

  Roles Data curation, Formal analysis, Funding acquisition, Investigation, Resources, Validation, Writing – original draft, Writing – review & editing

  Affiliations Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America, Department of Obstetrics and Gynecology, University of Washington, Seattle, Washington, United States of America, Department of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, United States of America

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• Timothy J. Henrich,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Methodology, Supervision

  Affiliation Department of Obstetrics and Gynecology, University of Washington, Seattle, Washington, United States of America

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• Steven G. Deeks ,

  Roles Conceptualization, Funding acquisition

  ¶‡ AKD & GGG share first authorship on this work. SGD & SAL share last authorship on this work.

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

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•  [ ... ],
• Sulggi A. Lee

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: sulggi.lee@ucsf.edu

  ¶‡ AKD & GGG share first authorship on this work. SGD & SAL share last authorship on this work.

  Affiliation Department of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California, San Francisco, California, United States of America

  https://orcid.org/0000-0003-1560-2250

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