Adaptation to HLA-associated immune pressure over the course of HIV infection and in circulating HIV-1 strains

• Eric Alves,

  Roles Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

  Affiliation School of Human Sciences, The University of Western Australia, Perth, Western Australia, Australia

  https://orcid.org/0000-0002-6072-708X

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• Marwah Al-Kaabi ,

  Contributed equally to this work with: Marwah Al-Kaabi, Niamh M. Keane

  Roles Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

  Affiliation School of Human Sciences, The University of Western Australia, Perth, Western Australia, Australia

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• Niamh M. Keane ,

  Contributed equally to this work with: Marwah Al-Kaabi, Niamh M. Keane

  Roles Data curation, Formal analysis, Writing – original draft, Writing – review & editing

  Current address: School of Medicine, University of Notre Dame, Fremantle, Western Australia, Australia

  Affiliation Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia

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• Shay Leary,

  Roles Software, Writing – review & editing

  Affiliation Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia

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• Coral-Ann M. Almeida,

  Roles Data curation, Writing – review & editing

  Current address: Department of Haematology, Fiona Stanley Hospital, Murdoch, Western Australia, Australia

  Affiliation Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia

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• Pooja Deshpande,

  Roles Data curation

  Affiliations School of Human Sciences, The University of Western Australia, Perth, Western Australia, Australia, Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia

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• Jennifer Currenti,

  Roles Data curation, Writing – review & editing

  Current address: School of Medicine, Curtin University, Bentley, Western Australia, Australia

  Affiliation School of Human Sciences, The University of Western Australia, Perth, Western Australia, Australia

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• Abha Chopra,

  Roles Data curation, Software

  Affiliation Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia

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• Rita Smith,

  Roles Data curation

  Affiliation Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Alison Castley,

  Roles Data curation, Writing – original draft, Writing – review & editing

  Affiliation Department of Clinical Immunology, Royal Perth Hospital, Perth, Western Australia, Australia

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• Simon Mallal,

  Roles Writing – review & editing

  Affiliations Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia, Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Spyros A. Kalams,

  Roles Data curation, Writing – review & editing

  Affiliation Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

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• Silvana Gaudieri ,

  Roles Conceptualization, Data curation, Funding acquisition, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: silvana.gaudieri@uwa.edu.au

  ¶‡ SG and MJ also contributed equally to this work.

  Affiliations School of Human Sciences, The University of Western Australia, Perth, Western Australia, Australia, Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia, Division of Infectious Diseases, Department of Medicine, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

  https://orcid.org/0000-0001-6873-0198

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• Mina John

  Roles Conceptualization, Data curation, Funding acquisition, Supervision, Writing – original draft, Writing – review & editing

  ¶‡ SG and MJ also contributed equally to this work.

  Affiliations Institute for Immunology and Infectious Diseases, Murdoch University, Perth, Western Australia, Australia, Department of Clinical Immunology, Royal Perth Hospital, Perth, Western Australia, Australia

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