Total infectome characterization of respiratory infections in pre-COVID-19 Wuhan, China

• Mang Shi ,

  Contributed equally to this work with: Mang Shi, Su Zhao, Bin Yu, Wei-Chen Wu, Yi Hu

  Roles Data curation, Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Current address: School of Medicine, Sun Yat-sen University, Guangzhou, China

  Affiliations Zhongshan Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute and Shanghai Public Health Clinical Center, Fudan University, Shanghai, China, Sydney Institute for Infectious Diseases, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, Australia

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• Su Zhao ,

  Contributed equally to this work with: Mang Shi, Su Zhao, Bin Yu, Wei-Chen Wu, Yi Hu

  Roles Investigation, Resources, Writing – original draft, Writing – review & editing

  Affiliation Department of Pulmonary and Critical Care Medicine, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

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• Bin Yu ,

  Contributed equally to this work with: Mang Shi, Su Zhao, Bin Yu, Wei-Chen Wu, Yi Hu

  Roles Investigation, Resources, Writing – original draft, Writing – review & editing

  Affiliation Wuhan Center for Disease Control and Prevention, Wuhan, China

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• Wei-Chen Wu ,

  Contributed equally to this work with: Mang Shi, Su Zhao, Bin Yu, Wei-Chen Wu, Yi Hu

  Roles Data curation, Formal analysis, Methodology, Validation, Writing – original draft, Writing – review & editing

  Current address: School of Medicine, Sun Yat-sen University, Guangzhou, China

  Affiliation Zhongshan Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute and Shanghai Public Health Clinical Center, Fudan University, Shanghai, China

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• Yi Hu ,

  Contributed equally to this work with: Mang Shi, Su Zhao, Bin Yu, Wei-Chen Wu, Yi Hu

  Roles Investigation, Resources, Writing – original draft, Writing – review & editing

  Affiliation Department of Pulmonary and Critical Care Medicine, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

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• Jun-Hua Tian,

  Roles Investigation, Resources, Writing – original draft, Writing – review & editing

  Affiliation Wuhan Center for Disease Control and Prevention, Wuhan, China

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• Wen Yin,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Department of Pulmonary and Critical Care Medicine, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

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• Fang Ni,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Department of Pulmonary and Critical Care Medicine, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

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• Hong-Ling Hu,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Department of Pulmonary and Critical Care Medicine, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

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• Shuang Geng,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Department of Pulmonary and Critical Care Medicine, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

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• Li Tan,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Department of Pulmonary and Critical Care Medicine, The Central Hospital of Wuhan, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China

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• Ying Peng,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Wuhan Center for Disease Control and Prevention, Wuhan, China

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• Zhi-Gang Song,

  Roles Investigation, Validation, Writing – original draft

  Affiliation Zhongshan Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute and Shanghai Public Health Clinical Center, Fudan University, Shanghai, China

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• Wen Wang,

  Roles Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliations Zhongshan Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute and Shanghai Public Health Clinical Center, Fudan University, Shanghai, China, Department of Zoonosis, National Institute for Communicable Disease Control and Prevention, China Center for Disease Control and Prevention, Beijing, China

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• Yan-Mei Chen,

  Roles Data curation, Formal analysis, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Zhongshan Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute and Shanghai Public Health Clinical Center, Fudan University, Shanghai, China

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• Edward C. Holmes,

  Roles Supervision, Writing – original draft, Writing – review & editing

  Affiliations Zhongshan Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute and Shanghai Public Health Clinical Center, Fudan University, Shanghai, China, Sydney Institute for Infectious Diseases, School of Life and Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, Australia

  https://orcid.org/0000-0001-9596-3552

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•  [ ... ],
• Yong-Zhen Zhang

  Roles Conceptualization, Data curation, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: zhangyongzhen@fudan.edu.cn

  Affiliation Zhongshan Hospital, State Key Laboratory of Genetic Engineering, School of Life Sciences, Human Phenome Institute and Shanghai Public Health Clinical Center, Fudan University, Shanghai, China

  https://orcid.org/0000-0002-5961-3691

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